[ { "name": "SC_RNA_COUNTER_CS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS", "type": "pipeline", "forks": [ { "stages": [ { "name": "CELLRANGER_PREFLIGHT_LOCAL", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT_LOCAL", "forki": 0 }, { "name": "CELLRANGER_PREFLIGHT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT", "forki": 0 }, { "name": "WRITE_GENE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.WRITE_GENE_INDEX", "forki": 0 }, { "name": "WRITE_GENE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX", "forki": 0 }, { "name": "COMBINE_GEM_WELL_CHEMISTRIES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES", "forki": 0 }, { "name": "DETECT_COUNT_CHEMISTRY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY", "forki": 0 }, { "name": "CHECK_BARCODES_COMPATIBILITY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY", "forki": 0 }, { "name": "SANITIZE_MAP_CALLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS", "forki": 0 }, { "name": "_MAKE_VDJ_CONFIG", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG", "forki": 0 }, { "name": "COPY_VDJ_REFERENCE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COPY_VDJ_REFERENCE", "forki": 0 }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS", "forki": 0 }, { "name": "FILTER_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES", "forki": 0 }, { "name": "DISABLE_BAMS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS", "forki": 0 }, { "name": "WRITE_POS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM", "forki": 0 }, { "name": "CALL_TAGS_MARGINAL", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL", "forki": 0 }, { "name": "CALL_TAGS_JIBES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES", "forki": 0 }, { "name": "DETERMINE_SAMPLE_ASSIGNMENTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS", "forki": 0 }, { "name": "COMPUTE_EXTRA_MULTIPLEXING_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS", "forki": 0 }, { "name": "INFER_GEM_WELL_THROUGHPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM", "forki": 0 }, { "name": "MULTI_COLLATE_PER_SAMPLE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "forki": 0 }, { "name": "WRITE_MATRIX_MARKET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET", "forki": 0 }, { "name": "COLLATE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS", "forki": 0 }, { "name": "WRITE_BARCODE_SUMMARY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY", "forki": 0 }, { "name": "SUBSAMPLE_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES", "forki": 0 }, { "name": "INITIAL_ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT", "forki": 0 }, { "name": "SET_TARGETED_UMI_FILTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER", "forki": 0 }, { "name": "SET_ALIGNER_SUBSAMPLE_RATE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE", "forki": 0 }, { "name": "ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT", "forki": 0 }, { "name": "WRITE_BARCODE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX", "forki": 0 }, { "name": "WRITE_H5_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS", "forki": 0 }, { "name": "WRITE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO", "forki": 0 }, { "name": "SUBSAMPLE_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS", "forki": 0 }, { "name": "SUMMARIZE_BASIC_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_MATRICES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES", "forki": 0 }, { "name": "PARSE_TARGET_FEATURES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES", "forki": 0 }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "forki": 0 }, { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "forki": 0 }, { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "forki": 0 }, { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "forki": 0 }, { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "forki": 0 }, { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "forki": 0 }, { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "forki": 0 }, { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "forki": 0 }, { "name": "HANDLE_NO_VDJ_REF", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF", "forki": 0 }, { "name": "RUN_MULTIGENOME_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS", "forki": 0 }, { "name": "CORRECT_CHEMISTRY_BATCH", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH", "forki": 0 }, { "name": "CHOOSE_DIMENSION_REDUCTION_OUTPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT", "forki": 0 }, { "name": "RUN_DIFFERENTIAL_EXPRESSION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION", "forki": 0 }, { "name": "ANALYZER_PREFLIGHT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT", "forki": 0 }, { "name": "RUN_PCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA", "forki": 0 }, { "name": "RUN_FBPCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA", "forki": 0 }, { "name": "RUN_GRAPH_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING", "forki": 0 }, { "name": "RUN_TSNE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE", "forki": 0 }, { "name": "RUN_UMAP", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP", "forki": 0 }, { "name": "SUMMARIZE_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS", "forki": 0 }, { "name": "PREPROCESS_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX", "forki": 0 }, { "name": "RUN_KMEANS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS", "forki": 0 }, { "name": "COMBINE_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING", "forki": 0 }, { "name": "CALL_PROTOSPACERS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS", "forki": 0 }, { "name": "_PERTURBATIONS_BY_FEATURE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE", "forki": 0 }, { "name": "_PERTURBATIONS_BY_TARGET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET", "forki": 0 }, { "name": "SUMMARIZE_CRISPR_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS", "forki": 0 }, { "name": "CALL_ANTIBODIES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES", "forki": 0 }, { "name": "SUMMARIZE_ANTIBODY_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS", "forki": 0 }, { "name": "SUBSAMPLE_OFF_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS", "forki": 0 }, { "name": "SUMMARIZE_TARGETED_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS", "forki": 0 }, { "name": "CALCULATE_TARGETED_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS", "forki": 0 }, { "name": "SUBSAMPLE_ON_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS", "forki": 0 }, { "name": "CLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS", "forki": 0 }, { "name": "CHOOSE_CLOUPE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE", "forki": 0 }, { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS", "forki": 0 }, { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS", "forki": 0 }, { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS", "forki": 0 }, { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO", "forki": 0 }, { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS", "forki": 0 }, { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS", "forki": 0 }, { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS", "forki": 0 }, { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS", "forki": 0 }, { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS", "forki": 0 }, { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO", "forki": 0 }, { "name": "GENERATE_LIBRARY_PLOTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS", "forki": 0 }, { "name": "SUMMARIZE_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS", "forki": 0 }, { "name": "SPLIT_VDJ_INPUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS", "forki": 0 }, { "name": "HANDLE_NO_VDJ_REF", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF", "forki": 0 }, { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "forki": 0 }, { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "forki": 0 }, { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "forki": 0 }, { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "forki": 0 }, { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "forki": 0 }, { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "forki": 0 }, { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "forki": 0 }, { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "forki": 0 }, { "name": "STRUCTIFY_PER_SAMPLE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS", "forki": 0 }, { "name": "DISABLE_FEATURE_STAGES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 157, "num_threads": 300, "duration": 18961.133542, "core_hours": 17.22355237694722, "maxrss": 13714552, "maxvmem": 16022456, "maxrss_requested": 20971520, "maxvmem_requested": 24117248, "in_blocks": 0, "out_blocks": 160617152, "total_blocks": 160617152, "in_blocks_rate": 0, "out_blocks_rate": 8470.862337645784, "total_blocks_rate": 8470.862337645784, "in_bytes": 91738304512, "out_bytes": 0, "in_bytes_rate": 4838228.912253289, "out_bytes_rate": 0, "in_bytes_peak": 2770025113.261957, "out_bytes_peak": 0, "start": "2021-12-15T15:39:02Z", "end": "2021-12-15T16:26:40Z", "walltime": 2858, "usertime": 52149.56469699997, "systemtime": 2619.085832, "total_files": 471, "total_bytes": 72948601048, "output_files": 203, "output_bytes": 56785182130, "vdr_files": 268, "vdr_bytes": 16163418918, "in_bytes_dev": 673859.303905334, "out_bytes_dev": 0 } } ], "maxbytes": 55988442359, "bytehist": [ { "ts": "2021-12-15T15:39:02+01:00", "bytes": 11766, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT_LOCAL alloc" }, { "ts": "2021-12-15T15:39:02+01:00", "bytes": 17877, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT alloc" }, { "ts": "2021-12-15T15:40:24+01:00", "bytes": 34832, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS alloc" }, { "ts": "2021-12-15T15:40:24+01:00", "bytes": 99276363, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX alloc" }, { "ts": "2021-12-15T15:40:24+01:00", "bytes": 198534807, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.WRITE_GENE_INDEX alloc" }, { "ts": "2021-12-15T15:40:24+01:00", "bytes": 198563811, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG alloc" }, { "ts": "2021-12-15T15:40:24+01:00", "bytes": 198570979, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY alloc" }, { "ts": "2021-12-15T15:40:35+01:00", "bytes": 198593896, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS alloc" }, { "ts": "2021-12-15T15:40:35+01:00", "bytes": 198600399, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES alloc" }, { "ts": "2021-12-15T15:40:35+01:00", "bytes": 198635098, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY alloc" }, { "ts": "2021-12-15T15:42:08+01:00", "bytes": 198641292, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES alloc" }, { "ts": "2021-12-15T15:42:08.16965607+01:00", "bytes": 99404618, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.WRITE_GENE_INDEX delete" }, { "ts": "2021-12-15T15:42:52+01:00", "bytes": 103976357, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD alloc" }, { "ts": "2021-12-15T15:42:52.454675986+01:00", "bytes": 4739683, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX delete" }, { "ts": "2021-12-15T15:42:56+01:00", "bytes": 23002228160, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD alloc" }, { "ts": "2021-12-15T15:47:35+01:00", "bytes": 23140485002, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD alloc" }, { "ts": "2021-12-15T15:47:40+01:00", "bytes": 23140498398, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION alloc" }, { "ts": "2021-12-15T15:47:40.827855319+01:00", "bytes": 22878449493, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD delete" }, { "ts": "2021-12-15T15:47:47+01:00", "bytes": 23900401157, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION alloc" }, { "ts": "2021-12-15T15:47:55+01:00", "bytes": 23979345847, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION alloc" }, { "ts": "2021-12-15T15:47:56+01:00", "bytes": 23979350882, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE alloc" }, { "ts": "2021-12-15T15:47:56+01:00", "bytes": 24117449353, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX alloc" }, { "ts": "2021-12-15T15:47:56+01:00", "bytes": 24117480444, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT alloc" }, { "ts": "2021-12-15T15:47:56.631972405+01:00", "bytes": 22968034453, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD delete" }, { "ts": "2021-12-15T15:47:56.675678112+01:00", "bytes": 22951536673, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION delete" }, { "ts": "2021-12-15T15:47:57+01:00", "bytes": 50166757486, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT alloc" }, { "ts": "2021-12-15T15:48:00.926790501+01:00", "bytes": 50088801525, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION delete" }, { "ts": "2021-12-15T16:09:25+01:00", "bytes": 50185240314, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT alloc" }, { "ts": "2021-12-15T16:09:28.237421832+01:00", "bytes": 28461082576, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD delete" }, { "ts": "2021-12-15T16:09:29+01:00", "bytes": 28612543538, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS alloc" }, { "ts": "2021-12-15T16:09:29+01:00", "bytes": 28791521422, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM alloc" }, { "ts": "2021-12-15T16:09:29+01:00", "bytes": 28803763905, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY alloc" }, { "ts": "2021-12-15T16:09:29+01:00", "bytes": 29340675730, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET alloc" }, { "ts": "2021-12-15T16:09:29+01:00", "bytes": 29419054433, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX alloc" }, { "ts": "2021-12-15T16:09:29.524282276+01:00", "bytes": 28412826909, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION delete" }, { "ts": "2021-12-15T16:09:29.535612335+01:00", "bytes": 28232324457, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT delete" }, { "ts": "2021-12-15T16:09:30+01:00", "bytes": 42149570177, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM alloc" }, { "ts": "2021-12-15T16:09:51+01:00", "bytes": 42149580981, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS alloc" }, { "ts": "2021-12-15T16:09:51+01:00", "bytes": 42149592004, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS alloc" }, { "ts": "2021-12-15T16:09:51.437836326+01:00", "bytes": 42149589141, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS delete" }, { "ts": "2021-12-15T16:09:51.442951784+01:00", "bytes": 42149587405, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD delete" }, { "ts": "2021-12-15T16:09:51.448195554+01:00", "bytes": 42149587236, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION delete" }, { "ts": "2021-12-15T16:10:00+01:00", "bytes": 42149593301, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES alloc" }, { "ts": "2021-12-15T16:10:11.427153114+01:00", "bytes": 41904116019, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT delete" }, { "ts": "2021-12-15T16:10:24+01:00", "bytes": 42067031205, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES alloc" }, { "ts": "2021-12-15T16:10:44+01:00", "bytes": 55988442359, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM alloc" }, { "ts": "2021-12-15T16:11:39.822237055+01:00", "bytes": 42071450684, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM delete" }, { "ts": "2021-12-15T16:20:43+01:00", "bytes": 42071456726, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT alloc" }, { "ts": "2021-12-15T16:20:43+01:00", "bytes": 42508855649, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO alloc" }, { "ts": "2021-12-15T16:20:43.51742641+01:00", "bytes": 42412526283, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT delete" }, { "ts": "2021-12-15T16:20:43.530769555+01:00", "bytes": 42410833930, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES delete" }, { "ts": "2021-12-15T16:20:46+01:00", "bytes": 42410840062, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT alloc" }, { "ts": "2021-12-15T16:20:48+01:00", "bytes": 42410845608, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL alloc" }, { "ts": "2021-12-15T16:20:49+01:00", "bytes": 42410851325, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL alloc" }, { "ts": "2021-12-15T16:22:37+01:00", "bytes": 42411050789, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES alloc" }, { "ts": "2021-12-15T16:22:37+01:00", "bytes": 42411643157, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS alloc" }, { "ts": "2021-12-15T16:22:46+01:00", "bytes": 42817815422, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS alloc" }, { "ts": "2021-12-15T16:23:15+01:00", "bytes": 42817822115, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES alloc" }, { "ts": "2021-12-15T16:23:18+01:00", "bytes": 42817827571, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS alloc" }, { "ts": "2021-12-15T16:23:20+01:00", "bytes": 42817833179, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES alloc" }, { "ts": "2021-12-15T16:23:20+01:00", "bytes": 42817844637, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS alloc" }, { "ts": "2021-12-15T16:23:20+01:00", "bytes": 42817896672, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT alloc" }, { "ts": "2021-12-15T16:23:20+01:00", "bytes": 42817925386, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS alloc" }, { "ts": "2021-12-15T16:23:21+01:00", "bytes": 42817930314, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS alloc" }, { "ts": "2021-12-15T16:23:21+01:00", "bytes": 42817935575, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX alloc" }, { "ts": "2021-12-15T16:23:23+01:00", "bytes": 42905459777, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX alloc" }, { "ts": "2021-12-15T16:23:34+01:00", "bytes": 42905470848, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS alloc" }, { "ts": "2021-12-15T16:23:34+01:00", "bytes": 42926111429, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA alloc" }, { "ts": "2021-12-15T16:23:34.01662359+01:00", "bytes": 42881981413, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX delete" }, { "ts": "2021-12-15T16:23:59+01:00", "bytes": 42882535310, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING alloc" }, { "ts": "2021-12-15T16:23:59+01:00", "bytes": 42903149285, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT alloc" }, { "ts": "2021-12-15T16:23:59+01:00", "bytes": 42904506771, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP alloc" }, { "ts": "2021-12-15T16:23:59+01:00", "bytes": 42928387214, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS alloc" }, { "ts": "2021-12-15T16:23:59+01:00", "bytes": 42976142039, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE alloc" }, { "ts": "2021-12-15T16:23:59.588592978+01:00", "bytes": 42955533847, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA delete" }, { "ts": "2021-12-15T16:24:00+01:00", "bytes": 42959232660, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS alloc" }, { "ts": "2021-12-15T16:24:12+01:00", "bytes": 42962827316, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS alloc" }, { "ts": "2021-12-15T16:24:13.218224088+01:00", "bytes": 42959201925, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS delete" }, { "ts": "2021-12-15T16:24:31+01:00", "bytes": 42996313627, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS alloc" }, { "ts": "2021-12-15T16:24:33+01:00", "bytes": 42996321497, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS alloc" }, { "ts": "2021-12-15T16:24:33.5276706+01:00", "bytes": 42553574516, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS delete" }, { "ts": "2021-12-15T16:24:34+01:00", "bytes": 42553619335, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS alloc" }, { "ts": "2021-12-15T16:24:34+01:00", "bytes": 42557768184, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION alloc" }, { "ts": "2021-12-15T16:24:34+01:00", "bytes": 42561904680, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING alloc" }, { "ts": "2021-12-15T16:24:34.614395269+01:00", "bytes": 42557244417, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS delete" }, { "ts": "2021-12-15T16:24:34.628566673+01:00", "bytes": 42556706237, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING delete" }, { "ts": "2021-12-15T16:24:35+01:00", "bytes": 42575868812, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION alloc" }, { "ts": "2021-12-15T16:24:39+01:00", "bytes": 42577211175, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE alloc" }, { "ts": "2021-12-15T16:24:39.158400913+01:00", "bytes": 42575875039, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE delete" }, { "ts": "2021-12-15T16:24:53+01:00", "bytes": 42577225196, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP alloc" }, { "ts": "2021-12-15T16:24:53.29755402+01:00", "bytes": 42575881218, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP delete" }, { "ts": "2021-12-15T16:25:00+01:00", "bytes": 42575923243, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS alloc" }, { "ts": "2021-12-15T16:25:00.646765356+01:00", "bytes": 42424485308, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS delete" }, { "ts": "2021-12-15T16:25:00.663419217+01:00", "bytes": 42424480302, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS delete" }, { "ts": "2021-12-15T16:25:00.667594902+01:00", "bytes": 42424452678, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS delete" }, { "ts": "2021-12-15T16:25:00.676691266+01:00", "bytes": 42424451868, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES delete" }, { "ts": "2021-12-15T16:25:00.68180483+01:00", "bytes": 42424451781, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO delete" }, { "ts": "2021-12-15T16:25:00.709048765+01:00", "bytes": 42419894314, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD delete" }, { "ts": "2021-12-15T16:25:00.732815218+01:00", "bytes": 42281801225, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX delete" }, { "ts": "2021-12-15T16:25:01.66206194+01:00", "bytes": 15492996180, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT delete" }, { "ts": "2021-12-15T16:25:03.210611023+01:00", "bytes": 15492959590, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS delete" }, { "ts": "2021-12-15T16:25:03.214883542+01:00", "bytes": 15492959588, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS delete" }, { "ts": "2021-12-15T16:25:46+01:00", "bytes": 15612643134, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION alloc" }, { "ts": "2021-12-15T16:25:47+01:00", "bytes": 15612651548, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS alloc" }, { "ts": "2021-12-15T16:25:47.754482376+01:00", "bytes": 15593544863, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION delete" }, { "ts": "2021-12-15T16:25:48+01:00", "bytes": 15974464689, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS alloc" }, { "ts": "2021-12-15T16:25:49+01:00", "bytes": 15991343250, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS alloc" }, { "ts": "2021-12-15T16:25:49.496787503+01:00", "bytes": 15611765228, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP delete" }, { "ts": "2021-12-15T16:25:49.535993004+01:00", "bytes": 15492097889, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION delete" }, { "ts": "2021-12-15T16:25:49.545536125+01:00", "bytes": 15448710430, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX delete" }, { "ts": "2021-12-15T16:25:49.565628293+01:00", "bytes": 15428102238, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT delete" }, { "ts": "2021-12-15T16:25:49.575770238+01:00", "bytes": 15426766102, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE delete" }, { "ts": "2021-12-15T16:25:49.615821532+01:00", "bytes": 15422648206, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING delete" }, { "ts": "2021-12-15T16:25:49.621759358+01:00", "bytes": 15232197958, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS delete" }, { "ts": "2021-12-15T16:26:03+01:00", "bytes": 15385352053, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS alloc" }, { "ts": "2021-12-15T16:26:03.189168996+01:00", "bytes": 15384914221, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES delete" }, { "ts": "2021-12-15T16:26:03.189767341+01:00", "bytes": 15372171760, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS delete" }, { "ts": "2021-12-15T16:26:03.194035622+01:00", "bytes": 15359939521, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY delete" }, { "ts": "2021-12-15T16:26:03.198864936+01:00", "bytes": 15359939519, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS delete" }, { "ts": "2021-12-15T16:26:03.20223797+01:00", "bytes": 15359902938, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS delete" }, { "ts": "2021-12-15T16:26:40+01:00", "bytes": 15513037360, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE alloc" }, { "ts": "2021-12-15T16:26:40+01:00", "bytes": 15972442692, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS alloc" }, { "ts": "2021-12-15T16:26:40.870477919+01:00", "bytes": 15877241980, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS delete" }, { "ts": "2021-12-15T16:26:40.871247047+01:00", "bytes": 15570983392, "desc": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS delete" } ], "highmem": { "rss": 201254383616, "shared": 699584512, "vmem": 233403707392, "text": 328417280, "stack": 206528794624, "proc_count": 1011 } }, { "name": "CELLRANGER_PREFLIGHT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT", "type": "stage", "forks": [ { "stages": [ { "name": "CELLRANGER_PREFLIGHT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 81.91198654, "core_hours": 0.022753329594444444, "maxrss": 104304, "maxvmem": 2217720, "maxrss_requested": 8388608, "maxvmem_requested": 11534336, "in_blocks": 0, "out_blocks": 22960, "total_blocks": 22960, "in_blocks_rate": 0, "out_blocks_rate": 280.30085668582785, "total_blocks_rate": 280.30085668582785, "in_bytes": 11714560, "out_bytes": 0, "in_bytes_rate": 143013.98970808063, "out_bytes_rate": 0, "in_bytes_peak": 396202.14965806913, "out_bytes_peak": 0, "start": "2021-12-15T15:39:02Z", "end": "2021-12-15T15:40:24Z", "walltime": 82, "usertime": 1.9454950000000002, "systemtime": 0.594423, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 76527.94336511809, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 81.91198654, "core_hours": 0.022753329594444444, "maxrss": 104304, "maxvmem": 2217720, "maxrss_requested": 8388608, "maxvmem_requested": 11534336, "in_blocks": 0, "out_blocks": 22960, "total_blocks": 22960, "in_blocks_rate": 0, "out_blocks_rate": 280.30085668582785, "total_blocks_rate": 280.30085668582785, "in_bytes": 11714560, "out_bytes": 0, "in_bytes_rate": 143013.98970808063, "out_bytes_rate": 0, "in_bytes_peak": 396202.14965806913, "out_bytes_peak": 0, "start": "2021-12-15T15:39:02Z", "end": "2021-12-15T15:40:24Z", "walltime": 82, "usertime": 1.9454950000000002, "systemtime": 0.594423, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0.001953125, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CELLRANGER_PREFLIGHT_LOCAL", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT_LOCAL", "type": "stage", "forks": [ { "stages": [ { "name": "CELLRANGER_PREFLIGHT_LOCAL", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT_LOCAL", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 81.913382676, "core_hours": 0.02275371741, "maxrss": 104656, "maxvmem": 2212532, "maxrss_requested": 8388608, "maxvmem_requested": 11534336, "in_blocks": 0, "out_blocks": 23272, "total_blocks": 23272, "in_blocks_rate": 0, "out_blocks_rate": 284.10498064827834, "total_blocks_rate": 284.10498064827834, "in_bytes": 11874304, "out_bytes": 0, "in_bytes_rate": 144961.7096997153, "out_bytes_rate": 0, "in_bytes_peak": 398905.76204632124, "out_bytes_peak": 0, "start": "2021-12-15T15:39:02Z", "end": "2021-12-15T15:40:24Z", "walltime": 82, "usertime": 1.981339, "systemtime": 0.6184259999999999, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 75631.95268522871, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 81.913382676, "core_hours": 0.02275371741, "maxrss": 104656, "maxvmem": 2212532, "maxrss_requested": 8388608, "maxvmem_requested": 11534336, "in_blocks": 0, "out_blocks": 23272, "total_blocks": 23272, "in_blocks_rate": 0, "out_blocks_rate": 284.10498064827834, "total_blocks_rate": 284.10498064827834, "in_bytes": 11874304, "out_bytes": 0, "in_bytes_rate": 144961.7096997153, "out_bytes_rate": 0, "in_bytes_peak": 398905.76204632124, "out_bytes_peak": 0, "start": "2021-12-15T15:39:02Z", "end": "2021-12-15T15:40:24Z", "walltime": 82, "usertime": 1.981339, "systemtime": 0.6184259999999999, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "FULL_COUNT_INPUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.FULL_COUNT_INPUTS", "type": "pipeline", "forks": [ { "stages": [ { "name": "WRITE_GENE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 103.209326788, "core_hours": 0.02866925744111111, "maxrss": 1716584, "maxvmem": 2359912, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 193904, "total_blocks": 193904, "in_blocks_rate": 0, "out_blocks_rate": 1878.7449355065935, "total_blocks_rate": 1878.7449355065935, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 79.37267158836339, "out_bytes_rate": 0, "in_bytes_peak": 16279.715819674937, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:42:08Z", "walltime": 104, "usertime": 6.413436, "systemtime": 2.3836720000000002, "total_files": 1, "total_bytes": 99236674, "output_files": 1, "output_bytes": 99236674, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 9.5367431640625e-7, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_GENE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_GENE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 103.209326788, "core_hours": 0.02866925744111111, "maxrss": 1716584, "maxvmem": 2359912, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 193904, "total_blocks": 193904, "in_blocks_rate": 0, "out_blocks_rate": 1878.7449355065935, "total_blocks_rate": 1878.7449355065935, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 79.37267158836339, "out_bytes_rate": 0, "in_bytes_peak": 16279.715819674937, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:42:08Z", "walltime": 104, "usertime": 6.413436, "systemtime": 2.3836720000000002, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1147.5175260960623, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 103.209326788, "core_hours": 0.02866925744111111, "maxrss": 1716584, "maxvmem": 2359912, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 193904, "total_blocks": 193904, "in_blocks_rate": 0, "out_blocks_rate": 1878.7449355065935, "total_blocks_rate": 1878.7449355065935, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 79.37267158836339, "out_bytes_rate": 0, "in_bytes_peak": 16279.715819674937, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:42:08Z", "walltime": 104, "usertime": 6.413436, "systemtime": 2.3836720000000002, "total_files": 1, "total_bytes": 99236674, "output_files": 0, "output_bytes": 0, "vdr_files": 1, "vdr_bytes": 99236674, "in_bytes_dev": 9.5367431640625e-7, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SC_MULTI_CORE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE", "type": "pipeline", "forks": [ { "stages": [ { "name": "DETECT_COUNT_CHEMISTRY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY", "forki": 0 }, { "name": "CHECK_BARCODES_COMPATIBILITY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY", "forki": 0 }, { "name": "COMBINE_GEM_WELL_CHEMISTRIES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES", "forki": 0 }, { "name": "SANITIZE_MAP_CALLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS", "forki": 0 }, { "name": "_MAKE_VDJ_CONFIG", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG", "forki": 0 }, { "name": "COPY_VDJ_REFERENCE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COPY_VDJ_REFERENCE", "forki": 0 }, { "name": "PARSE_TARGET_FEATURES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES", "forki": 0 }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_MATRICES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES", "forki": 0 }, { "name": "SUBSAMPLE_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES", "forki": 0 }, { "name": "INITIAL_ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT", "forki": 0 }, { "name": "SET_TARGETED_UMI_FILTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER", "forki": 0 }, { "name": "SET_ALIGNER_SUBSAMPLE_RATE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE", "forki": 0 }, { "name": "ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT", "forki": 0 }, { "name": "WRITE_BARCODE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX", "forki": 0 }, { "name": "WRITE_H5_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS", "forki": 0 }, { "name": "COLLATE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS", "forki": 0 }, { "name": "WRITE_BARCODE_SUMMARY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY", "forki": 0 }, { "name": "WRITE_MATRIX_MARKET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET", "forki": 0 }, { "name": "WRITE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO", "forki": 0 }, { "name": "SUBSAMPLE_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS", "forki": 0 }, { "name": "SUMMARIZE_BASIC_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS", "forki": 0 }, { "name": "WRITE_POS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM", "forki": 0 }, { "name": "DETERMINE_SAMPLE_ASSIGNMENTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS", "forki": 0 }, { "name": "COMPUTE_EXTRA_MULTIPLEXING_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS", "forki": 0 }, { "name": "INFER_GEM_WELL_THROUGHPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT", "forki": 0 }, { "name": "CALL_TAGS_MARGINAL", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL", "forki": 0 }, { "name": "CALL_TAGS_JIBES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM", "forki": 0 }, { "name": "MULTI_COLLATE_PER_SAMPLE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS", "forki": 0 }, { "name": "FILTER_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES", "forki": 0 }, { "name": "DISABLE_BAMS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS", "forki": 0 }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 }, { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "forki": 0 }, { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "forki": 0 }, { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "forki": 0 }, { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "forki": 0 }, { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "forki": 0 }, { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "forki": 0 }, { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "forki": 0 }, { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "forki": 0 }, { "name": "HANDLE_NO_VDJ_REF", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF", "forki": 0 }, { "name": "PREPROCESS_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX", "forki": 0 }, { "name": "RUN_KMEANS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS", "forki": 0 }, { "name": "COMBINE_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING", "forki": 0 }, { "name": "RUN_MULTIGENOME_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS", "forki": 0 }, { "name": "CORRECT_CHEMISTRY_BATCH", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH", "forki": 0 }, { "name": "CHOOSE_DIMENSION_REDUCTION_OUTPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT", "forki": 0 }, { "name": "RUN_DIFFERENTIAL_EXPRESSION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION", "forki": 0 }, { "name": "ANALYZER_PREFLIGHT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT", "forki": 0 }, { "name": "RUN_PCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA", "forki": 0 }, { "name": "RUN_FBPCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA", "forki": 0 }, { "name": "RUN_GRAPH_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING", "forki": 0 }, { "name": "RUN_TSNE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE", "forki": 0 }, { "name": "RUN_UMAP", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP", "forki": 0 }, { "name": "SUMMARIZE_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS", "forki": 0 }, { "name": "CALL_PROTOSPACERS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS", "forki": 0 }, { "name": "_PERTURBATIONS_BY_FEATURE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE", "forki": 0 }, { "name": "_PERTURBATIONS_BY_TARGET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET", "forki": 0 }, { "name": "SUMMARIZE_CRISPR_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS", "forki": 0 }, { "name": "CALL_ANTIBODIES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES", "forki": 0 }, { "name": "SUMMARIZE_ANTIBODY_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS", "forki": 0 }, { "name": "CALCULATE_TARGETED_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS", "forki": 0 }, { "name": "SUBSAMPLE_ON_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS", "forki": 0 }, { "name": "SUBSAMPLE_OFF_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS", "forki": 0 }, { "name": "SUMMARIZE_TARGETED_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS", "forki": 0 }, { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO", "forki": 0 }, { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS", "forki": 0 }, { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS", "forki": 0 }, { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS", "forki": 0 }, { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS", "forki": 0 }, { "name": "GENERATE_LIBRARY_PLOTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS", "forki": 0 }, { "name": "SUMMARIZE_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS", "forki": 0 }, { "name": "CLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS", "forki": 0 }, { "name": "CHOOSE_CLOUPE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE", "forki": 0 }, { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS", "forki": 0 }, { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS", "forki": 0 }, { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS", "forki": 0 }, { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO", "forki": 0 }, { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS", "forki": 0 }, { "name": "SPLIT_VDJ_INPUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS", "forki": 0 }, { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "forki": 0 }, { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "forki": 0 }, { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "forki": 0 }, { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "forki": 0 }, { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "forki": 0 }, { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "forki": 0 }, { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "forki": 0 }, { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "forki": 0 }, { "name": "HANDLE_NO_VDJ_REF", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF", "forki": 0 }, { "name": "STRUCTIFY_PER_SAMPLE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS", "forki": 0 }, { "name": "DISABLE_FEATURE_STAGES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 153, "num_threads": 296, "duration": 18590.886049060002, "core_hours": 17.120705851130555, "maxrss": 13714552, "maxvmem": 16022456, "maxrss_requested": 20971520, "maxvmem_requested": 24117248, "in_blocks": 0, "out_blocks": 160183112, "total_blocks": 160183112, "in_blocks_rate": 0, "out_blocks_rate": 8616.217192515105, "total_blocks_rate": 8616.217192515105, "in_bytes": 91714699264, "out_bytes": 0, "in_bytes_rate": 4933315.121289623, "out_bytes_rate": 0, "in_bytes_peak": 2770025113.261957, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T16:26:40Z", "walltime": 2776, "usertime": 52132.764346999975, "systemtime": 2613.1400980000003, "total_files": 469, "total_bytes": 72750127700, "output_files": 202, "output_bytes": 56685945456, "vdr_files": 267, "vdr_bytes": 16064182244, "in_bytes_dev": 855905.6982200018, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "COPY_VDJ_REFERENCE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COPY_VDJ_REFERENCE", "type": "stage", "forks": [ { "stages": [ { "name": "COPY_VDJ_REFERENCE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COPY_VDJ_REFERENCE", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "COUNT_ANALYZER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER", "type": "pipeline", "forks": [ { "stages": [ { "name": "CALL_ANTIBODIES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES", "forki": 0 }, { "name": "SUMMARIZE_ANTIBODY_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS", "forki": 0 }, { "name": "CALCULATE_TARGETED_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS", "forki": 0 }, { "name": "SUBSAMPLE_ON_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS", "forki": 0 }, { "name": "SUBSAMPLE_OFF_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS", "forki": 0 }, { "name": "SUMMARIZE_TARGETED_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS", "forki": 0 }, { "name": "RUN_MULTIGENOME_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS", "forki": 0 }, { "name": "CORRECT_CHEMISTRY_BATCH", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH", "forki": 0 }, { "name": "CHOOSE_DIMENSION_REDUCTION_OUTPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT", "forki": 0 }, { "name": "RUN_DIFFERENTIAL_EXPRESSION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION", "forki": 0 }, { "name": "ANALYZER_PREFLIGHT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT", "forki": 0 }, { "name": "RUN_PCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA", "forki": 0 }, { "name": "RUN_FBPCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA", "forki": 0 }, { "name": "RUN_GRAPH_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING", "forki": 0 }, { "name": "RUN_TSNE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE", "forki": 0 }, { "name": "RUN_UMAP", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP", "forki": 0 }, { "name": "SUMMARIZE_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS", "forki": 0 }, { "name": "PREPROCESS_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX", "forki": 0 }, { "name": "RUN_KMEANS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS", "forki": 0 }, { "name": "COMBINE_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING", "forki": 0 }, { "name": "CALL_PROTOSPACERS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS", "forki": 0 }, { "name": "_PERTURBATIONS_BY_FEATURE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE", "forki": 0 }, { "name": "_PERTURBATIONS_BY_TARGET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET", "forki": 0 }, { "name": "SUMMARIZE_CRISPR_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 42, "num_threads": 45, "duration": 703.1532712520001, "core_hours": 0.22376153846888888, "maxrss": 920076, "maxvmem": 6540856, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 1303928, "total_blocks": 1303928, "in_blocks_rate": 0, "out_blocks_rate": 1854.400816024492, "total_blocks_rate": 1854.400816024492, "in_bytes": 469311488, "out_bytes": 0, "in_bytes_rate": 667438.3910130534, "out_bytes_rate": 0, "in_bytes_peak": 307582794.33784604, "out_bytes_peak": 0, "start": "2021-12-15T16:23:20Z", "end": "2021-12-15T16:25:49Z", "walltime": 149, "usertime": 1014.936031, "systemtime": 48.373633000000005, "total_files": 265, "total_bytes": 665633981, "output_files": 118, "output_bytes": 380900500, "vdr_files": 147, "vdr_bytes": 284733481, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SC_RNA_ANALYZER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER", "type": "pipeline", "forks": [ { "stages": [ { "name": "RUN_MULTIGENOME_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS", "forki": 0 }, { "name": "CORRECT_CHEMISTRY_BATCH", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH", "forki": 0 }, { "name": "CHOOSE_DIMENSION_REDUCTION_OUTPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT", "forki": 0 }, { "name": "RUN_DIFFERENTIAL_EXPRESSION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION", "forki": 0 }, { "name": "ANALYZER_PREFLIGHT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT", "forki": 0 }, { "name": "RUN_PCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA", "forki": 0 }, { "name": "RUN_FBPCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA", "forki": 0 }, { "name": "RUN_GRAPH_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING", "forki": 0 }, { "name": "RUN_TSNE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE", "forki": 0 }, { "name": "RUN_UMAP", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP", "forki": 0 }, { "name": "SUMMARIZE_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS", "forki": 0 }, { "name": "PREPROCESS_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX", "forki": 0 }, { "name": "RUN_KMEANS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS", "forki": 0 }, { "name": "COMBINE_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 42, "num_threads": 45, "duration": 703.1532712520001, "core_hours": 0.22376153846888888, "maxrss": 920076, "maxvmem": 6540856, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 1303928, "total_blocks": 1303928, "in_blocks_rate": 0, "out_blocks_rate": 1854.400816024492, "total_blocks_rate": 1854.400816024492, "in_bytes": 469311488, "out_bytes": 0, "in_bytes_rate": 667438.3910130534, "out_bytes_rate": 0, "in_bytes_peak": 307582794.33784604, "out_bytes_peak": 0, "start": "2021-12-15T16:23:20Z", "end": "2021-12-15T16:25:49Z", "walltime": 149, "usertime": 1014.9360310000001, "systemtime": 48.37363299999999, "total_files": 265, "total_bytes": 665633981, "output_files": 118, "output_bytes": 380900500, "vdr_files": 147, "vdr_bytes": 284733481, "in_bytes_dev": 9063318.644383987, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "ANALYZER_PREFLIGHT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT", "type": "stage", "forks": [ { "stages": [ { "name": "ANALYZER_PREFLIGHT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.959957282, "core_hours": 0.00026665480055555556, "maxrss": 108084, "maxvmem": 1754824, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 96, "total_blocks": 96, "in_blocks_rate": 0, "out_blocks_rate": 100.00444998968194, "total_blocks_rate": 100.00444998968194, "in_bytes": 20480, "out_bytes": 0, "in_bytes_rate": 21334.28266446548, "out_bytes_rate": 0, "in_bytes_peak": 40692.214869764655, "out_bytes_peak": 0, "start": "2021-12-15T16:23:20Z", "end": "2021-12-15T16:23:21Z", "walltime": 1, "usertime": 0.7925960000000001, "systemtime": 0.11271500000000001, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4099.653507073826, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.959957282, "core_hours": 0.00026665480055555556, "maxrss": 108084, "maxvmem": 1754824, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 96, "total_blocks": 96, "in_blocks_rate": 0, "out_blocks_rate": 100.00444998968194, "total_blocks_rate": 100.00444998968194, "in_bytes": 20480, "out_bytes": 0, "in_bytes_rate": 21334.28266446548, "out_bytes_rate": 0, "in_bytes_peak": 40692.214869764655, "out_bytes_peak": 0, "start": "2021-12-15T16:23:20Z", "end": "2021-12-15T16:23:21Z", "walltime": 1, "usertime": 0.7925960000000001, "systemtime": 0.11271500000000001, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CHOOSE_DIMENSION_REDUCTION_OUTPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT", "type": "stage", "forks": [ { "stages": [ { "name": "CHOOSE_DIMENSION_REDUCTION_OUTPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.186118149, "core_hours": 0.000051699485833333335, "maxrss": 22604, "maxvmem": 1185776, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 40352, "total_blocks": 40352, "in_blocks_rate": 0, "out_blocks_rate": 216808.51769055577, "total_blocks_rate": 216808.51769055577, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:23:59Z", "walltime": 0, "usertime": 0.062806, "systemtime": 0.024586, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.186118149, "core_hours": 0.000051699485833333335, "maxrss": 22604, "maxvmem": 1185776, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 40352, "total_blocks": 40352, "in_blocks_rate": 0, "out_blocks_rate": 216808.51769055577, "total_blocks_rate": 216808.51769055577, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:23:59Z", "walltime": 0, "usertime": 0.062806, "systemtime": 0.024586, "total_files": 8, "total_bytes": 20608192, "output_files": 0, "output_bytes": 0, "vdr_files": 8, "vdr_bytes": 20608192, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "COMBINE_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING", "type": "stage", "forks": [ { "stages": [ { "name": "COMBINE_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.486306736, "core_hours": 0.00013508520444444446, "maxrss": 61308, "maxvmem": 1116764, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 8160, "total_blocks": 8160, "in_blocks_rate": 0, "out_blocks_rate": 16779.533154564408, "total_blocks_rate": 16779.533154564408, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:24:34Z", "end": "2021-12-15T16:24:34Z", "walltime": 0, "usertime": 0.277774, "systemtime": 0.080597, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.486306736, "core_hours": 0.00013508520444444446, "maxrss": 61308, "maxvmem": 1116764, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 8160, "total_blocks": 8160, "in_blocks_rate": 0, "out_blocks_rate": 16779.533154564408, "total_blocks_rate": 16779.533154564408, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:24:34Z", "end": "2021-12-15T16:24:34Z", "walltime": 0, "usertime": 0.277774, "systemtime": 0.080597, "total_files": 22, "total_bytes": 4117896, "output_files": 0, "output_bytes": 0, "vdr_files": 22, "vdr_bytes": 4117896, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CORRECT_CHEMISTRY_BATCH", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH", "type": "stage", "forks": [ { "stages": [ { "name": "CORRECT_CHEMISTRY_BATCH", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "PREPROCESS_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX", "type": "stage", "forks": [ { "stages": [ { "name": "PREPROCESS_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 1.002607573, "core_hours": 0.0002785021036111111, "maxrss": 147960, "maxvmem": 1885188, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 96, "total_blocks": 96, "in_blocks_rate": 0, "out_blocks_rate": 95.75032404029129, "total_blocks_rate": 95.75032404029129, "in_bytes": 16384, "out_bytes": 0, "in_bytes_rate": 16341.388636209715, "out_bytes_rate": 0, "in_bytes_peak": 32579.704749328932, "out_bytes_peak": 0, "start": "2021-12-15T16:23:21Z", "end": "2021-12-15T16:23:22Z", "walltime": 1, "usertime": 0.809112, "systemtime": 0.082956, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 3032.5839275966664, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 10.777283929, "core_hours": 0.0029936899802777777, "maxrss": 920076, "maxvmem": 2480588, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 171008, "total_blocks": 171008, "in_blocks_rate": 0, "out_blocks_rate": 15867.448712179143, "total_blocks_rate": 15867.448712179143, "in_bytes": 85741568, "out_bytes": 0, "in_bytes_rate": 7955767.757893316, "out_bytes_rate": 0, "in_bytes_peak": 10798773.897639157, "out_bytes_peak": 0, "start": "2021-12-15T16:23:23Z", "end": "2021-12-15T16:23:33Z", "walltime": 10, "usertime": 10.353138, "systemtime": 0.425681, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2842127.0234280345, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 2, "num_threads": 2, "duration": 11.779891502, "core_hours": 0.0032721920838888886, "maxrss": 920076, "maxvmem": 2480588, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 171104, "total_blocks": 171104, "in_blocks_rate": 0, "out_blocks_rate": 14525.091336448202, "total_blocks_rate": 14525.091336448202, "in_bytes": 85757952, "out_bytes": 0, "in_bytes_rate": 7280029.021102609, "out_bytes_rate": 0, "in_bytes_peak": 10798773.897639157, "out_bytes_peak": 0, "start": "2021-12-15T16:23:21Z", "end": "2021-12-15T16:23:33Z", "walltime": 12, "usertime": 11.16225, "systemtime": 0.508637, "total_files": 2, "total_bytes": 87517475, "output_files": 0, "output_bytes": 0, "vdr_files": 2, "vdr_bytes": 87517475, "in_bytes_dev": 2215480.784210311, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUN_DIFFERENTIAL_EXPRESSION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION", "type": "stage", "forks": [ { "stages": [ { "name": "RUN_DIFFERENTIAL_EXPRESSION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 28.580754114, "core_hours": 0.007939098365000001, "maxrss": 618776, "maxvmem": 1918956, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 6152, "total_blocks": 6152, "in_blocks_rate": 0, "out_blocks_rate": 215.24974377728205, "total_blocks_rate": 215.24974377728205, "in_bytes": 2256896, "out_bytes": 0, "in_bytes_rate": 78965.58610727775, "out_bytes_rate": 0, "in_bytes_peak": 163819.65353350327, "out_bytes_peak": 0, "start": "2021-12-15T16:24:35Z", "end": "2021-12-15T16:25:03Z", "walltime": 28, "usertime": 27.942847, "systemtime": 0.460843, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 58686.05236212486, "out_bytes_dev": 0 } }, { "index": 1, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 48.746957175, "core_hours": 0.0135408214375, "maxrss": 618768, "maxvmem": 1990612, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 4672, "total_blocks": 4672, "in_blocks_rate": 0, "out_blocks_rate": 95.84187959112343, "total_blocks_rate": 95.84187959112343, "in_bytes": 2011136, "out_bytes": 0, "in_bytes_rate": 41256.64690782825, "out_bytes_rate": 0, "in_bytes_peak": 160575.44397117672, "out_bytes_peak": 0, "start": "2021-12-15T16:24:35Z", "end": "2021-12-15T16:25:23Z", "walltime": 48, "usertime": 47.964251, "systemtime": 0.6117389999999999, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 47639.52951984226, "out_bytes_dev": 0 } }, { "index": 2, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 45.442218063, "core_hours": 0.012622838350833334, "maxrss": 618668, "maxvmem": 1990044, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 5176, "total_blocks": 5176, "in_blocks_rate": 0, "out_blocks_rate": 113.90289076171673, "total_blocks_rate": 113.90289076171673, "in_bytes": 1757184, "out_bytes": 0, "in_bytes_rate": 38668.53500777366, "out_bytes_rate": 0, "in_bytes_peak": 162181.9668025176, "out_bytes_peak": 0, "start": "2021-12-15T16:24:35Z", "end": "2021-12-15T16:25:20Z", "walltime": 45, "usertime": 44.686073, "systemtime": 0.563945, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 58259.72362920796, "out_bytes_dev": 0 } }, { "index": 3, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 60.77140441, "core_hours": 0.016880945669444446, "maxrss": 618700, "maxvmem": 1993548, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 4232, "total_blocks": 4232, "in_blocks_rate": 0, "out_blocks_rate": 69.63801546280573, "total_blocks_rate": 69.63801546280573, "in_bytes": 1900544, "out_bytes": 0, "in_bytes_rate": 31273.65606326622, "out_bytes_rate": 0, "in_bytes_peak": 167931.47017657862, "out_bytes_peak": 0, "start": "2021-12-15T16:24:35Z", "end": "2021-12-15T16:25:35Z", "walltime": 60, "usertime": 59.985883, "systemtime": 0.583927, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 51838.773171561275, "out_bytes_dev": 0 } }, { "index": 4, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 57.794224902, "core_hours": 0.01605395136166667, "maxrss": 618676, "maxvmem": 2057632, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 4312, "total_blocks": 4312, "in_blocks_rate": 0, "out_blocks_rate": 74.60953075003141, "total_blocks_rate": 74.60953075003141, "in_bytes": 1323008, "out_bytes": 0, "in_bytes_rate": 22891.698993167334, "out_bytes_rate": 0, "in_bytes_peak": 71262.17016000717, "out_bytes_peak": 0, "start": "2021-12-15T16:24:35Z", "end": "2021-12-15T16:25:32Z", "walltime": 57, "usertime": 57.022611000000005, "systemtime": 0.5917589999999999, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 24932.70285280436, "out_bytes_dev": 0 } }, { "index": 5, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 67.236273079, "core_hours": 0.018676742521944446, "maxrss": 618720, "maxvmem": 1994364, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 3752, "total_blocks": 3752, "in_blocks_rate": 0, "out_blocks_rate": 55.80321198933121, "total_blocks_rate": 55.80321198933121, "in_bytes": 1462272, "out_bytes": 0, "in_bytes_rate": 21748.260768140546, "out_bytes_rate": 0, "in_bytes_peak": 64709.66544877787, "out_bytes_peak": 0, "start": "2021-12-15T16:24:35Z", "end": "2021-12-15T16:25:42Z", "walltime": 67, "usertime": 66.521898, "systemtime": 0.534783, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 23268.460573746284, "out_bytes_dev": 0 } }, { "index": 6, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 71.7003632, "core_hours": 0.019916767555555555, "maxrss": 618676, "maxvmem": 2059664, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 3360, "total_blocks": 3360, "in_blocks_rate": 0, "out_blocks_rate": 46.861687305929856, "total_blocks_rate": 46.861687305929856, "in_bytes": 1441792, "out_bytes": 0, "in_bytes_rate": 20108.573173866433, "out_bytes_rate": 0, "in_bytes_peak": 84366.6566659772, "out_bytes_peak": 0, "start": "2021-12-15T16:24:35Z", "end": "2021-12-15T16:25:46Z", "walltime": 71, "usertime": 70.920834, "systemtime": 0.610193, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 24467.872284142617, "out_bytes_dev": 0 } }, { "index": 7, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 45.278636418, "core_hours": 0.012577399005, "maxrss": 618712, "maxvmem": 1986800, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 4992, "total_blocks": 4992, "in_blocks_rate": 0, "out_blocks_rate": 110.25066996088884, "total_blocks_rate": 110.25066996088884, "in_bytes": 2207744, "out_bytes": 0, "in_bytes_rate": 48759.065525266946, "out_bytes_rate": 0, "in_bytes_peak": 147539.92654334335, "out_bytes_peak": 0, "start": "2021-12-15T16:24:35Z", "end": "2021-12-15T16:25:20Z", "walltime": 45, "usertime": 44.559163999999996, "systemtime": 0.535617, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 53976.10433036745, "out_bytes_dev": 0 } }, { "index": 8, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 25.184063501, "core_hours": 0.0069955731947222224, "maxrss": 618708, "maxvmem": 1923864, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1472, "total_blocks": 1472, "in_blocks_rate": 0, "out_blocks_rate": 58.44966202303097, "total_blocks_rate": 58.44966202303097, "in_bytes": 503808, "out_bytes": 0, "in_bytes_rate": 20005.032149795643, "out_bytes_rate": 0, "in_bytes_peak": 58975.26325005842, "out_bytes_peak": 0, "start": "2021-12-15T16:24:35Z", "end": "2021-12-15T16:25:00Z", "walltime": 25, "usertime": 24.462087, "systemtime": 0.441328, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 25374.20371904332, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.019002422, "core_hours": 0.000005278450555555556, "maxrss": 22604, "maxvmem": 1140408, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 4209.989652897931, "total_blocks_rate": 4209.989652897931, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:24:34Z", "end": "2021-12-15T16:24:34Z", "walltime": 0, "usertime": 0.009138, "systemtime": 0.002652, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.850547344, "core_hours": 0.0002362631511111111, "maxrss": 28132, "maxvmem": 1509676, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 233840, "total_blocks": 233840, "in_blocks_rate": 0, "out_blocks_rate": 274928.8462888904, "total_blocks_rate": 274928.8462888904, "in_bytes": 65482752, "out_bytes": 0, "in_bytes_rate": 76988955.94928811, "out_bytes_rate": 0, "in_bytes_peak": 130236287.84231167, "out_bytes_peak": 0, "start": "2021-12-15T16:25:46Z", "end": "2021-12-15T16:25:47Z", "walltime": 1, "usertime": 0.78249, "systemtime": 0.047123, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 11544686.500929682, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 11, "num_threads": 11, "duration": 451.6044446280001, "core_hours": 0.12544567906333334, "maxrss": 618776, "maxvmem": 2059664, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 272040, "total_blocks": 272040, "in_blocks_rate": 0, "out_blocks_rate": 602.3855682467592, "total_blocks_rate": 602.3855682467592, "in_bytes": 80347136, "out_bytes": 0, "in_bytes_rate": 177914.8477295973, "out_bytes_rate": 0, "in_bytes_peak": 130236287.84231167, "out_bytes_peak": 0, "start": "2021-12-15T16:24:34Z", "end": "2021-12-15T16:25:47Z", "walltime": 73, "usertime": 444.857276, "systemtime": 4.983909000000001, "total_files": 31, "total_bytes": 138774024, "output_files": 0, "output_bytes": 0, "vdr_files": 31, "vdr_bytes": 138774024, "in_bytes_dev": 3336627.9456673046, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUN_FBPCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA", "type": "stage", "forks": [ { "stages": [ { "name": "RUN_FBPCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUN_GRAPH_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING", "type": "stage", "forks": [ { "stages": [ { "name": "RUN_GRAPH_CLUSTERING", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.022877599, "core_hours": 0.000006354888611111111, "maxrss": 22604, "maxvmem": 1139192, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 3147.183408538632, "total_blocks_rate": 3147.183408538632, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:23:59Z", "walltime": 0, "usertime": 0.003444, "systemtime": 0.004915, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 4, "duration": 34.129422412, "core_hours": 0.03792158045777778, "maxrss": 618832, "maxvmem": 1981424, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1144, "total_blocks": 1144, "in_blocks_rate": 0, "out_blocks_rate": 33.519465585733634, "total_blocks_rate": 33.519465585733634, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 240.02750181672195, "out_bytes_rate": 0, "in_bytes_peak": 16280.663017520606, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:24:33Z", "walltime": 34, "usertime": 33.86851, "systemtime": 0.519689, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2072.2025100542046, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 2, "num_threads": 5, "duration": 34.152300010999994, "core_hours": 0.037927935346388886, "maxrss": 618832, "maxvmem": 1981424, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1216, "total_blocks": 1216, "in_blocks_rate": 0, "out_blocks_rate": 35.60521544986261, "total_blocks_rate": 35.60521544986261, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 239.86671460960073, "out_bytes_rate": 0, "in_bytes_peak": 16280.663017520606, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:24:33Z", "walltime": 34, "usertime": 33.871954, "systemtime": 0.524604, "total_files": 4, "total_bytes": 538180, "output_files": 0, "output_bytes": 0, "vdr_files": 4, "vdr_bytes": 538180, "in_bytes_dev": 6.210273675404844, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUN_KMEANS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS", "type": "stage", "forks": [ { "stages": [ { "name": "RUN_KMEANS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 5.9968487360000005, "core_hours": 0.0016657913155555557, "maxrss": 621988, "maxvmem": 6210028, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 864, "total_blocks": 864, "in_blocks_rate": 0, "out_blocks_rate": 144.0756700787325, "total_blocks_rate": 144.0756700787325, "in_bytes": 421888, "out_bytes": 0, "in_bytes_rate": 70351.61608585219, "out_bytes_rate": 0, "in_bytes_peak": 82716.72541903333, "out_bytes_peak": 0, "start": "2021-12-15T16:24:00Z", "end": "2021-12-15T16:24:06Z", "walltime": 6, "usertime": 12.165719, "systemtime": 1.766096, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 19263.518649482838, "out_bytes_dev": 0 } }, { "index": 1, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 6.628000581, "core_hours": 0.0018411112725, "maxrss": 622108, "maxvmem": 6471592, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 864, "total_blocks": 864, "in_blocks_rate": 0, "out_blocks_rate": 130.35605375122702, "total_blocks_rate": 130.35605375122702, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1235.9685096412636, "out_bytes_rate": 0, "in_bytes_peak": 16314.359188590131, "out_bytes_peak": 0, "start": "2021-12-15T16:24:00Z", "end": "2021-12-15T16:24:07Z", "walltime": 7, "usertime": 15.883832, "systemtime": 2.079479, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4696.041334114386, "out_bytes_dev": 0 } }, { "index": 2, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 8.181012105, "core_hours": 0.0022725033625, "maxrss": 622040, "maxvmem": 6403052, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 864, "total_blocks": 864, "in_blocks_rate": 0, "out_blocks_rate": 105.6104047898851, "total_blocks_rate": 105.6104047898851, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1001.3430972670586, "out_bytes_rate": 0, "in_bytes_peak": 16271.031691359742, "out_bytes_peak": 0, "start": "2021-12-15T16:24:00Z", "end": "2021-12-15T16:24:09Z", "walltime": 9, "usertime": 30.101616, "systemtime": 3.2654729999999996, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4687.483165332123, "out_bytes_dev": 0 } }, { "index": 3, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 9.51377935, "core_hours": 0.0026427164861111112, "maxrss": 621832, "maxvmem": 6540856, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 864, "total_blocks": 864, "in_blocks_rate": 0, "out_blocks_rate": 90.81564415302526, "total_blocks_rate": 90.81564415302526, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 861.066848265721, "out_bytes_rate": 0, "in_bytes_peak": 16305.378919590066, "out_bytes_peak": 0, "start": "2021-12-15T16:24:00Z", "end": "2021-12-15T16:24:10Z", "walltime": 10, "usertime": 48.500274, "systemtime": 4.53165, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4694.228011416613, "out_bytes_dev": 0 } }, { "index": 4, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 8.854973853, "core_hours": 0.0024597149591666667, "maxrss": 622124, "maxvmem": 6540852, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 864, "total_blocks": 864, "in_blocks_rate": 0, "out_blocks_rate": 97.57228133511462, "total_blocks_rate": 97.57228133511462, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 925.1297785847905, "out_bytes_rate": 0, "in_bytes_peak": 16306.481627990555, "out_bytes_peak": 0, "start": "2021-12-15T16:24:00Z", "end": "2021-12-15T16:24:09Z", "walltime": 9, "usertime": 39.946647, "systemtime": 4.130371, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4692.878456747265, "out_bytes_dev": 0 } }, { "index": 5, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 10.062779452, "core_hours": 0.002795216514444444, "maxrss": 621996, "maxvmem": 6471348, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 864, "total_blocks": 864, "in_blocks_rate": 0, "out_blocks_rate": 85.86096953841894, "total_blocks_rate": 85.86096953841894, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 814.0891926605648, "out_bytes_rate": 0, "in_bytes_peak": 16289.934878758184, "out_bytes_peak": 0, "start": "2021-12-15T16:24:00Z", "end": "2021-12-15T16:24:11Z", "walltime": 11, "usertime": 54.775304999999996, "systemtime": 5.393939, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4691.844119027896, "out_bytes_dev": 0 } }, { "index": 6, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 10.830464757, "core_hours": 0.0030084624324999997, "maxrss": 621892, "maxvmem": 6403752, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 864, "total_blocks": 864, "in_blocks_rate": 0, "out_blocks_rate": 79.77496990067533, "total_blocks_rate": 79.77496990067533, "in_bytes": 413696, "out_bytes": 0, "in_bytes_rate": 38197.43743984929, "out_bytes_rate": 0, "in_bytes_peak": 81073.30342163143, "out_bytes_peak": 0, "start": "2021-12-15T16:24:00Z", "end": "2021-12-15T16:24:11Z", "walltime": 11, "usertime": 68.714136, "systemtime": 6.55835, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 39891.07131540424, "out_bytes_dev": 0 } }, { "index": 7, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 10.601278918, "core_hours": 0.0029447996994444443, "maxrss": 622156, "maxvmem": 6404016, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 872, "total_blocks": 872, "in_blocks_rate": 0, "out_blocks_rate": 82.25422675366308, "total_blocks_rate": 82.25422675366308, "in_bytes": 425984, "out_bytes": 0, "in_bytes_rate": 40182.321708064694, "out_bytes_rate": 0, "in_bytes_peak": 83494.82204950115, "out_bytes_peak": 0, "start": "2021-12-15T16:24:00Z", "end": "2021-12-15T16:24:11Z", "walltime": 11, "usertime": 64.756008, "systemtime": 6.208646, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 41096.86775861634, "out_bytes_dev": 0 } }, { "index": 8, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 10.964837655, "core_hours": 0.0030457882375, "maxrss": 622060, "maxvmem": 6404520, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 880, "total_blocks": 880, "in_blocks_rate": 0, "out_blocks_rate": 80.25654621513866, "total_blocks_rate": 80.25654621513866, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 747.1154847663817, "out_bytes_rate": 0, "in_bytes_peak": 16273.432958791956, "out_bytes_peak": 0, "start": "2021-12-15T16:24:00Z", "end": "2021-12-15T16:24:11Z", "walltime": 11, "usertime": 76.837163, "systemtime": 6.412574, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 3470.8045986219563, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.988687814, "core_hours": 0.0002746355038888889, "maxrss": 114400, "maxvmem": 1806980, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 136, "total_blocks": 136, "in_blocks_rate": 0, "out_blocks_rate": 137.55605973312825, "total_blocks_rate": 137.55605973312825, "in_bytes": 16384, "out_bytes": 0, "in_bytes_rate": 16571.459431379215, "out_bytes_rate": 0, "in_bytes_peak": 32569.172950599746, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:24:00Z", "walltime": 1, "usertime": 0.655287, "systemtime": 0.11443900000000001, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2897.097491000546, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.912386051, "core_hours": 0.0002534405697222222, "maxrss": 126136, "maxvmem": 1850968, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 7112, "total_blocks": 7112, "in_blocks_rate": 0, "out_blocks_rate": 7794.946001426758, "total_blocks_rate": 7794.946001426758, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 8978.65546171091, "out_bytes_rate": 0, "in_bytes_peak": 16285.075591774439, "out_bytes_peak": 0, "start": "2021-12-15T16:24:12Z", "end": "2021-12-15T16:24:12Z", "walltime": 0, "usertime": 0.747097, "systemtime": 0.137906, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1290.2089856185141, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 11, "num_threads": 11, "duration": 83.53504927200001, "core_hours": 0.023204180353333333, "maxrss": 622156, "maxvmem": 6540856, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 15048, "total_blocks": 15048, "in_blocks_rate": 0, "out_blocks_rate": 180.13995479911588, "total_blocks_rate": 180.13995479911588, "in_bytes": 1335296, "out_bytes": 0, "in_bytes_rate": 15984.859189489649, "out_bytes_rate": 0, "in_bytes_peak": 83494.82204950115, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:24:12Z", "walltime": 13, "usertime": 413.083084, "systemtime": 40.598923, "total_files": 56, "total_bytes": 7209294, "output_files": 0, "output_bytes": 0, "vdr_files": 56, "vdr_bytes": 7209294, "in_bytes_dev": 22328.112180368025, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUN_MULTIGENOME_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS", "type": "stage", "forks": [ { "stages": [ { "name": "RUN_MULTIGENOME_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.660270825, "core_hours": 0.0001834085625, "maxrss": 101036, "maxvmem": 1753916, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 121.16240332139468, "total_blocks_rate": 121.16240332139468, "in_bytes": 12288, "out_bytes": 0, "in_bytes_rate": 18610.54515016622, "out_bytes_rate": 0, "in_bytes_peak": 24425.338066516477, "out_bytes_peak": 0, "start": "2021-12-15T16:23:34Z", "end": "2021-12-15T16:23:34Z", "walltime": 0, "usertime": 0.5547839999999999, "systemtime": 0.06400600000000001, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1977.2647834585525, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.608693431, "core_hours": 0.0001690815086111111, "maxrss": 105396, "maxvmem": 1848844, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 118.28614592030976, "total_blocks_rate": 118.28614592030976, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 13458.3348247108, "out_bytes_rate": 0, "in_bytes_peak": 16288.66887140852, "out_bytes_peak": 0, "start": "2021-12-15T16:23:34Z", "end": "2021-12-15T16:23:35Z", "walltime": 1, "usertime": 0.54788, "systemtime": 0.060603000000000004, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1309.5786104769845, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 2, "num_threads": 2, "duration": 1.2689642559999998, "core_hours": 0.0003524900711111111, "maxrss": 105396, "maxvmem": 1848844, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 152, "total_blocks": 152, "in_blocks_rate": 0, "out_blocks_rate": 119.78272774926768, "total_blocks_rate": 119.78272774926768, "in_bytes": 20480, "out_bytes": 0, "in_bytes_rate": 16139.146475690803, "out_bytes_rate": 0, "in_bytes_peak": 24425.338066516477, "out_bytes_peak": 0, "start": "2021-12-15T16:23:34Z", "end": "2021-12-15T16:23:35Z", "walltime": 1, "usertime": 1.1026639999999999, "systemtime": 0.12460900000000001, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2573.9763714436576, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUN_PCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA", "type": "stage", "forks": [ { "stages": [ { "name": "RUN_PCA", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.24991162, "core_hours": 0.00006941989444444445, "maxrss": 22604, "maxvmem": 1140664, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 288.1018497659293, "total_blocks_rate": 288.1018497659293, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:34Z", "end": "2021-12-15T16:23:34Z", "walltime": 0, "usertime": 0.007240999999999999, "systemtime": 0.00537, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 24.66404798, "core_hours": 0.006851124438888889, "maxrss": 617120, "maxvmem": 2026208, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 40352, "total_blocks": 40352, "in_blocks_rate": 0, "out_blocks_rate": 1636.0655814780005, "total_blocks_rate": 1636.0655814780005, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 332.14336943566065, "out_bytes_rate": 0, "in_bytes_peak": 16288.035488129946, "out_bytes_peak": 0, "start": "2021-12-15T16:23:34Z", "end": "2021-12-15T16:23:59Z", "walltime": 25, "usertime": 23.854942, "systemtime": 0.714123, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2517.7411657407565, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 2, "num_threads": 2, "duration": 24.9139596, "core_hours": 0.006920544333333333, "maxrss": 617120, "maxvmem": 2026208, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 40424, "total_blocks": 40424, "in_blocks_rate": 0, "out_blocks_rate": 1622.5441739899106, "total_blocks_rate": 1622.5441739899106, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 328.81164341295636, "out_bytes_rate": 0, "in_bytes_peak": 16288.035488129946, "out_bytes_peak": 0, "start": "2021-12-15T16:23:34Z", "end": "2021-12-15T16:23:59Z", "walltime": 25, "usertime": 23.862183, "systemtime": 0.7194929999999999, "total_files": 8, "total_bytes": 20608192, "output_files": 0, "output_bytes": 0, "vdr_files": 8, "vdr_bytes": 20608192, "in_bytes_dev": 33.098494058296886, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUN_TSNE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE", "type": "stage", "forks": [ { "stages": [ { "name": "RUN_TSNE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 39.095164639, "core_hours": 0.010859767955277776, "maxrss": 64556, "maxvmem": 1868480, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 2704, "total_blocks": 2704, "in_blocks_rate": 0, "out_blocks_rate": 69.16456357118349, "total_blocks_rate": 69.16456357118349, "in_bytes": 12288, "out_bytes": 0, "in_bytes_rate": 314.3099693649048, "out_bytes_rate": 0, "in_bytes_peak": 16279.651697885298, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:24:39Z", "walltime": 40, "usertime": 35.267852999999995, "systemtime": 0.097903, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1930.0651626974263, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.035339031, "core_hours": 0.0000098163975, "maxrss": 22604, "maxvmem": 1139192, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 2037.4073075178546, "total_blocks_rate": 2037.4073075178546, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:23:59Z", "walltime": 0, "usertime": 0.015376, "systemtime": 0.003786, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.022465888, "core_hours": 0.000006240524444444444, "maxrss": 22604, "maxvmem": 1139448, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 2688, "total_blocks": 2688, "in_blocks_rate": 0, "out_blocks_rate": 119648.06376672046, "total_blocks_rate": 119648.06376672046, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:24:39Z", "end": "2021-12-15T16:24:39Z", "walltime": 0, "usertime": 0.004002, "systemtime": 0.004098, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 3, "num_threads": 3, "duration": 39.152969557999995, "core_hours": 0.01087582487722222, "maxrss": 64556, "maxvmem": 1868480, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 5464, "total_blocks": 5464, "in_blocks_rate": 0, "out_blocks_rate": 139.55518729954315, "total_blocks_rate": 139.55518729954315, "in_bytes": 12288, "out_bytes": 0, "in_bytes_rate": 313.84592634275003, "out_bytes_rate": 0, "in_bytes_peak": 16279.651697885298, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:24:39Z", "walltime": 40, "usertime": 35.287231, "systemtime": 0.105787, "total_files": 8, "total_bytes": 2672272, "output_files": 0, "output_bytes": 0, "vdr_files": 8, "vdr_bytes": 2672272, "in_bytes_dev": 12.068057513578756, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUN_UMAP", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP", "type": "stage", "forks": [ { "stages": [ { "name": "RUN_UMAP", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 53.462736572, "core_hours": 0.014850760158888887, "maxrss": 91272, "maxvmem": 1783532, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 2712, "total_blocks": 2712, "in_blocks_rate": 0, "out_blocks_rate": 50.72692072819097, "total_blocks_rate": 50.72692072819097, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 153.22822072468304, "out_bytes_rate": 0, "in_bytes_peak": 16279.640342363698, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:24:53Z", "walltime": 54, "usertime": 49.724751, "systemtime": 0.115123, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1615.5802689311467, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.045839307, "core_hours": 0.000012733140833333334, "maxrss": 22604, "maxvmem": 1139176, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 1570.7043738684793, "total_blocks_rate": 1570.7043738684793, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:23:59Z", "walltime": 0, "usertime": 0.021426, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.018935024, "core_hours": 0.0000052597288888888895, "maxrss": 22604, "maxvmem": 1139172, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 2704, "total_blocks": 2704, "in_blocks_rate": 0, "out_blocks_rate": 142804.1496012891, "total_blocks_rate": 142804.1496012891, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:24:53Z", "end": "2021-12-15T16:24:53Z", "walltime": 0, "usertime": 0.002022, "systemtime": 0.006011, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 3, "num_threads": 3, "duration": 53.527510903, "core_hours": 0.01486875302861111, "maxrss": 91272, "maxvmem": 1783532, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 5488, "total_blocks": 5488, "in_blocks_rate": 0, "out_blocks_rate": 102.52671770867678, "total_blocks_rate": 102.52671770867678, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 153.04279727942424, "out_bytes_rate": 0, "in_bytes_peak": 16279.640342363698, "out_bytes_peak": 0, "start": "2021-12-15T16:23:59Z", "end": "2021-12-15T16:24:53Z", "walltime": 54, "usertime": 49.74819899999999, "systemtime": 0.121134, "total_files": 8, "total_bytes": 2687956, "output_files": 0, "output_bytes": 0, "vdr_files": 8, "vdr_bytes": 2687956, "in_bytes_dev": 5.32707450141226, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUMMARIZE_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS", "type": "stage", "forks": [ { "stages": [ { "name": "SUMMARIZE_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.619192912, "core_hours": 0.0001719980311111111, "maxrss": 78120, "maxvmem": 1780552, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 372144, "total_blocks": 372144, "in_blocks_rate": 0, "out_blocks_rate": 601014.6317695575, "total_blocks_rate": 601014.6317695575, "in_bytes": 147111936, "out_bytes": 0, "in_bytes_rate": 237586595.62950552, "out_bytes_rate": 0, "in_bytes_peak": 292330324.53989744, "out_bytes_peak": 0, "start": "2021-12-15T16:25:48Z", "end": "2021-12-15T16:25:48Z", "walltime": 0, "usertime": 0.361701, "systemtime": 0.20691, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 23006323.5675283, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.382724979, "core_hours": 0.00010631249416666667, "maxrss": 56140, "maxvmem": 1118188, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 209.02738099046312, "total_blocks_rate": 209.02738099046312, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:25:47Z", "end": "2021-12-15T16:25:48Z", "walltime": 1, "usertime": 0.226626, "systemtime": 0.039965, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.583881464, "core_hours": 0.00016218929555555554, "maxrss": 62612, "maxvmem": 1789396, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 372160, "total_blocks": 372160, "in_blocks_rate": 0, "out_blocks_rate": 637389.6466081341, "total_blocks_rate": 637389.6466081341, "in_bytes": 154681344, "out_bytes": 0, "in_bytes_rate": 264919086.38497216, "out_bytes_rate": 0, "in_bytes_peak": 307582794.33784604, "out_bytes_peak": 0, "start": "2021-12-15T16:25:48Z", "end": "2021-12-15T16:25:49Z", "walltime": 1, "usertime": 0.239687, "systemtime": 0.22176400000000002, "total_files": 56, "total_bytes": 95249536, "output_files": 56, "output_bytes": 95249536, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 25279787.990076814, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 3, "num_threads": 3, "duration": 1.5857993550000002, "core_hours": 0.00044049982083333334, "maxrss": 78120, "maxvmem": 1789396, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 744384, "total_blocks": 744384, "in_blocks_rate": 0, "out_blocks_rate": 469406.1689790509, "total_blocks_rate": 469406.1689790509, "in_bytes": 301793280, "out_bytes": 0, "in_bytes_rate": 190309876.8759431, "out_bytes_rate": 0, "in_bytes_peak": 307582794.33784604, "out_bytes_peak": 0, "start": "2021-12-15T16:25:47Z", "end": "2021-12-15T16:25:49Z", "walltime": 2, "usertime": 0.828014, "systemtime": 0.46863900000000003, "total_files": 173, "total_bytes": 476150034, "output_files": 112, "output_bytes": 190499072, "vdr_files": 61, "vdr_bytes": 285650962, "in_bytes_dev": 107996668.14509352, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_ANTIBODY_ANALYZER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER", "type": "pipeline", "forks": [ { "stages": [ { "name": "CALL_ANTIBODIES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES", "forki": 0 }, { "name": "SUMMARIZE_ANTIBODY_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CALL_ANTIBODIES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES", "type": "stage", "forks": [ { "stages": [ { "name": "CALL_ANTIBODIES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUMMARIZE_ANTIBODY_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS", "type": "stage", "forks": [ { "stages": [ { "name": "SUMMARIZE_ANTIBODY_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_CRISPR_ANALYZER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER", "type": "pipeline", "forks": [ { "stages": [ { "name": "CALL_PROTOSPACERS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS", "forki": 0 }, { "name": "_PERTURBATIONS_BY_FEATURE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE", "forki": 0 }, { "name": "_PERTURBATIONS_BY_TARGET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET", "forki": 0 }, { "name": "SUMMARIZE_CRISPR_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CALL_PROTOSPACERS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS", "type": "stage", "forks": [ { "stages": [ { "name": "CALL_PROTOSPACERS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUMMARIZE_CRISPR_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS", "type": "stage", "forks": [ { "stages": [ { "name": "SUMMARIZE_CRISPR_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_PERTURBATIONS_BY_FEATURE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE", "type": "stage", "forks": [ { "stages": [ { "name": "_PERTURBATIONS_BY_FEATURE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_PERTURBATIONS_BY_TARGET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET", "type": "stage", "forks": [ { "stages": [ { "name": "_PERTURBATIONS_BY_TARGET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_TARGETED_ANALYZER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER", "type": "pipeline", "forks": [ { "stages": [ { "name": "CALCULATE_TARGETED_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS", "forki": 0 }, { "name": "SUBSAMPLE_ON_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS", "forki": 0 }, { "name": "SUBSAMPLE_OFF_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS", "forki": 0 }, { "name": "SUMMARIZE_TARGETED_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CALCULATE_TARGETED_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS", "type": "stage", "forks": [ { "stages": [ { "name": "CALCULATE_TARGETED_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUBSAMPLE_OFF_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS", "type": "stage", "forks": [ { "stages": [ { "name": "SUBSAMPLE_OFF_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUBSAMPLE_ON_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS", "type": "stage", "forks": [ { "stages": [ { "name": "SUBSAMPLE_ON_TARGET_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUMMARIZE_TARGETED_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS", "type": "stage", "forks": [ { "stages": [ { "name": "SUMMARIZE_TARGETED_ANALYSIS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "DISABLE_FEATURE_STAGES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES", "type": "stage", "forks": [ { "stages": [ { "name": "DISABLE_FEATURE_STAGES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.085275153, "core_hours": 0.000023687542500000003, "maxrss": 22168, "maxvmem": 1186656, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 938.1396243287888, "total_blocks_rate": 938.1396243287888, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:20Z", "end": "2021-12-15T16:23:20Z", "walltime": 0, "usertime": 0.048288, "systemtime": 0.00862, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.085275153, "core_hours": 0.000023687542500000003, "maxrss": 22168, "maxvmem": 1186656, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 938.1396243287888, "total_blocks_rate": 938.1396243287888, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:20Z", "end": "2021-12-15T16:23:20Z", "walltime": 0, "usertime": 0.048288, "systemtime": 0.00862, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MAKE_FULL_CONFIG", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG", "type": "pipeline", "forks": [ { "stages": [ { "name": "_MAKE_VDJ_CONFIG", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.131579047, "core_hours": 0.000036549735277777776, "maxrss": 18640, "maxvmem": 1184880, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 607.9995396227486, "total_blocks_rate": 607.9995396227486, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:40:25Z", "walltime": 1, "usertime": 0.035418, "systemtime": 0.019179, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_MAKE_VDJ_CONFIG", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG", "type": "stage", "forks": [ { "stages": [ { "name": "_MAKE_VDJ_CONFIG", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.131579047, "core_hours": 0.000036549735277777776, "maxrss": 18640, "maxvmem": 1184880, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 607.9995396227486, "total_blocks_rate": 607.9995396227486, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:40:25Z", "walltime": 1, "usertime": 0.035418, "systemtime": 0.019179, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.131579047, "core_hours": 0.000036549735277777776, "maxrss": 18640, "maxvmem": 1184880, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 607.9995396227486, "total_blocks_rate": 607.9995396227486, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:40:25Z", "walltime": 1, "usertime": 0.035418, "systemtime": 0.019179, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MULTI_CHEMISTRY_DETECTOR", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR", "type": "pipeline", "forks": [ { "stages": [ { "name": "DETECT_COUNT_CHEMISTRY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY", "forki": 0 }, { "name": "CHECK_BARCODES_COMPATIBILITY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY", "forki": 0 }, { "name": "COMBINE_GEM_WELL_CHEMISTRIES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 3, "num_threads": 3, "duration": 10.471632325, "core_hours": 0.002908786756944444, "maxrss": 267476, "maxvmem": 1781276, "maxrss_requested": 20971520, "maxvmem_requested": 24117248, "in_blocks": 0, "out_blocks": 216, "total_blocks": 216, "in_blocks_rate": 0, "out_blocks_rate": 20.627156616673897, "total_blocks_rate": 20.627156616673897, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 782.304013906447, "out_bytes_rate": 0, "in_bytes_peak": 16297.351707204787, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:40:35Z", "walltime": 11, "usertime": 9.370548, "systemtime": 0.25342499999999996, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 92.39415005123907, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "COMBINE_GEM_WELL_CHEMISTRIES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES", "type": "stage", "forks": [ { "stages": [ { "name": "COMBINE_GEM_WELL_CHEMISTRIES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.144057601, "core_hours": 0.00004001600027777778, "maxrss": 19532, "maxvmem": 1132816, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 499.8000764985667, "total_blocks_rate": 499.8000764985667, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:40:35Z", "end": "2021-12-15T15:40:35Z", "walltime": 0, "usertime": 0.002591, "systemtime": 0.004997, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.144057601, "core_hours": 0.00004001600027777778, "maxrss": 19532, "maxvmem": 1132816, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 499.8000764985667, "total_blocks_rate": 499.8000764985667, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:40:35Z", "end": "2021-12-15T15:40:35Z", "walltime": 0, "usertime": 0.002591, "systemtime": 0.004997, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_GEM_WELL_CHEMISTRY_DETECTOR", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR", "type": "pipeline", "forks": [ { "stages": [ { "name": "DETECT_COUNT_CHEMISTRY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY", "forki": 0 }, { "name": "CHECK_BARCODES_COMPATIBILITY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 2, "num_threads": 2, "duration": 10.327574724, "core_hours": 0.0028687707566666665, "maxrss": 267476, "maxvmem": 1781276, "maxrss_requested": 20971520, "maxvmem_requested": 24117248, "in_blocks": 0, "out_blocks": 144, "total_blocks": 144, "in_blocks_rate": 0, "out_blocks_rate": 13.943254234255203, "total_blocks_rate": 13.943254234255203, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 793.2162408820737, "out_bytes_rate": 0, "in_bytes_peak": 16297.351707204787, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:40:35Z", "walltime": 11, "usertime": 9.367956999999999, "systemtime": 0.24842799999999998, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 31.679647452455384, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CHECK_BARCODES_COMPATIBILITY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY", "type": "stage", "forks": [ { "stages": [ { "name": "CHECK_BARCODES_COMPATIBILITY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.016446885, "core_hours": 0.000004568579166666667, "maxrss": 19532, "maxvmem": 1131588, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 4377.728670201074, "total_blocks_rate": 4377.728670201074, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:40:35Z", "end": "2021-12-15T15:40:35Z", "walltime": 0, "usertime": 0.007425, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.016446885, "core_hours": 0.000004568579166666667, "maxrss": 19532, "maxvmem": 1131588, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 4377.728670201074, "total_blocks_rate": 4377.728670201074, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:40:35Z", "end": "2021-12-15T15:40:35Z", "walltime": 0, "usertime": 0.007425, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "DETECT_COUNT_CHEMISTRY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY", "type": "stage", "forks": [ { "stages": [ { "name": "DETECT_COUNT_CHEMISTRY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 10.311127839, "core_hours": 0.0028642021774999997, "maxrss": 267476, "maxvmem": 1781276, "maxrss_requested": 20971520, "maxvmem_requested": 24117248, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 6.982747292461341, "total_blocks_rate": 6.982747292461341, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 794.4814697200459, "out_bytes_rate": 0, "in_bytes_peak": 16297.351707204787, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:40:35Z", "walltime": 11, "usertime": 9.360532, "systemtime": 0.24842799999999998, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4658.697715986561, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 10.311127839, "core_hours": 0.0028642021774999997, "maxrss": 267476, "maxvmem": 1781276, "maxrss_requested": 20971520, "maxvmem_requested": 24117248, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 6.982747292461341, "total_blocks_rate": 6.982747292461341, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 794.4814697200459, "out_bytes_rate": 0, "in_bytes_peak": 16297.351707204787, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:40:35Z", "walltime": 11, "usertime": 9.360532, "systemtime": 0.24842799999999998, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "VDJ_CHEMISTRY_DETECTOR", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR", "type": "pipeline", "forks": [ { "stages": [], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MULTI_GEM_WELL_PROCESSOR", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR", "type": "pipeline", "forks": [ { "stages": [ { "name": "PARSE_TARGET_FEATURES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES", "forki": 0 }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "WRITE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO", "forki": 0 }, { "name": "SUBSAMPLE_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS", "forki": 0 }, { "name": "SUMMARIZE_BASIC_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_MATRICES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES", "forki": 0 }, { "name": "WRITE_BARCODE_SUMMARY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY", "forki": 0 }, { "name": "WRITE_MATRIX_MARKET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET", "forki": 0 }, { "name": "COLLATE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION", "forki": 0 }, { "name": "SUBSAMPLE_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES", "forki": 0 }, { "name": "INITIAL_ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT", "forki": 0 }, { "name": "SET_TARGETED_UMI_FILTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER", "forki": 0 }, { "name": "SET_ALIGNER_SUBSAMPLE_RATE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE", "forki": 0 }, { "name": "ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT", "forki": 0 }, { "name": "WRITE_BARCODE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX", "forki": 0 }, { "name": "WRITE_H5_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS", "forki": 0 }, { "name": "DISABLE_BAMS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS", "forki": 0 }, { "name": "WRITE_POS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM", "forki": 0 }, { "name": "CALL_TAGS_JIBES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES", "forki": 0 }, { "name": "DETERMINE_SAMPLE_ASSIGNMENTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS", "forki": 0 }, { "name": "COMPUTE_EXTRA_MULTIPLEXING_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS", "forki": 0 }, { "name": "INFER_GEM_WELL_THROUGHPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT", "forki": 0 }, { "name": "CALL_TAGS_MARGINAL", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM", "forki": 0 }, { "name": "MULTI_COLLATE_PER_SAMPLE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS", "forki": 0 }, { "name": "FILTER_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES", "forki": 0 }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 100, "num_threads": 239, "duration": 17825.902033375, "core_hours": 16.869692004651665, "maxrss": 13714552, "maxvmem": 16022456, "maxrss_requested": 17825792, "maxvmem_requested": 20971520, "in_blocks": 0, "out_blocks": 158246296, "total_blocks": 158246296, "in_blocks_rate": 0, "out_blocks_rate": 8877.323330046318, "total_blocks_rate": 8877.323330046318, "in_bytes": 90945744896, "out_bytes": 0, "in_bytes_rate": 5101887.395416204, "out_bytes_rate": 0, "in_bytes_peak": 2770025113.261957, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T16:25:00Z", "walltime": 2676, "usertime": 51039.88478599998, "systemtime": 2562.8632490000005, "total_files": 196, "total_bytes": 71608235533, "output_files": 80, "output_bytes": 56147787819, "vdr_files": 116, "vdr_bytes": 15460447714, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "COUNT_GEM_WELL_PROCESSOR", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR", "type": "pipeline", "forks": [ { "stages": [ { "name": "PARSE_TARGET_FEATURES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES", "forki": 0 }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "COLLATE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS", "forki": 0 }, { "name": "WRITE_BARCODE_SUMMARY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY", "forki": 0 }, { "name": "WRITE_MATRIX_MARKET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET", "forki": 0 }, { "name": "SET_ALIGNER_SUBSAMPLE_RATE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE", "forki": 0 }, { "name": "ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT", "forki": 0 }, { "name": "WRITE_BARCODE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX", "forki": 0 }, { "name": "WRITE_H5_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION", "forki": 0 }, { "name": "SET_TARGETED_UMI_FILTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER", "forki": 0 }, { "name": "SUBSAMPLE_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES", "forki": 0 }, { "name": "INITIAL_ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS", "forki": 0 }, { "name": "WRITE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO", "forki": 0 }, { "name": "SUBSAMPLE_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS", "forki": 0 }, { "name": "SUMMARIZE_BASIC_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_MATRICES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS", "forki": 0 }, { "name": "FILTER_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES", "forki": 0 }, { "name": "DISABLE_BAMS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS", "forki": 0 }, { "name": "WRITE_POS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM", "forki": 0 }, { "name": "INFER_GEM_WELL_THROUGHPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT", "forki": 0 }, { "name": "CALL_TAGS_MARGINAL", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL", "forki": 0 }, { "name": "CALL_TAGS_JIBES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES", "forki": 0 }, { "name": "DETERMINE_SAMPLE_ASSIGNMENTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS", "forki": 0 }, { "name": "COMPUTE_EXTRA_MULTIPLEXING_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM", "forki": 0 }, { "name": "MULTI_COLLATE_PER_SAMPLE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 100, "num_threads": 239, "duration": 17825.902033375, "core_hours": 16.869692004651668, "maxrss": 13714552, "maxvmem": 16022456, "maxrss_requested": 17825792, "maxvmem_requested": 20971520, "in_blocks": 0, "out_blocks": 158246296, "total_blocks": 158246296, "in_blocks_rate": 0, "out_blocks_rate": 8877.323330046318, "total_blocks_rate": 8877.323330046318, "in_bytes": 90945744896, "out_bytes": 0, "in_bytes_rate": 5101887.395416204, "out_bytes_rate": 0, "in_bytes_peak": 2770025113.261957, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T16:25:00Z", "walltime": 2676, "usertime": 51039.88478599998, "systemtime": 2562.863249, "total_files": 196, "total_bytes": 71608235533, "output_files": 80, "output_bytes": 56147787819, "vdr_files": 116, "vdr_bytes": 15460447714, "in_bytes_dev": 245468.46695547015, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "type": "stage", "forks": [ { "stages": [ { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.026084493, "core_hours": 0.0000072456925, "maxrss": 19532, "maxvmem": 1133632, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 3066.9562946843553, "total_blocks_rate": 3066.9562946843553, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:40:35Z", "end": "2021-12-15T15:40:35Z", "walltime": 0, "usertime": 0.008808, "systemtime": 0.0055, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.026084493, "core_hours": 0.0000072456925, "maxrss": 19532, "maxvmem": 1133632, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 3066.9562946843553, "total_blocks_rate": 3066.9562946843553, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:40:35Z", "end": "2021-12-15T15:40:35Z", "walltime": 0, "usertime": 0.008808, "systemtime": 0.0055, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "PARSE_TARGET_FEATURES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES", "type": "stage", "forks": [ { "stages": [ { "name": "PARSE_TARGET_FEATURES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 44.150181066, "core_hours": 0.012263939185000001, "maxrss": 109252, "maxvmem": 2169584, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 16832, "total_blocks": 16832, "in_blocks_rate": 0, "out_blocks_rate": 381.24418957281017, "total_blocks_rate": 381.24418957281017, "in_bytes": 7823360, "out_bytes": 0, "in_bytes_rate": 177198.8202790126, "out_bytes_rate": 0, "in_bytes_peak": 278782.2903662288, "out_bytes_peak": 0, "start": "2021-12-15T15:42:08Z", "end": "2021-12-15T15:42:52Z", "walltime": 44, "usertime": 1.275895, "systemtime": 0.15536, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 42018.97540743962, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 44.150181066, "core_hours": 0.012263939185000001, "maxrss": 109252, "maxvmem": 2169584, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 16832, "total_blocks": 16832, "in_blocks_rate": 0, "out_blocks_rate": 381.24418957281017, "total_blocks_rate": 381.24418957281017, "in_bytes": 7823360, "out_bytes": 0, "in_bytes_rate": 177198.8202790126, "out_bytes_rate": 0, "in_bytes_peak": 278782.2903662288, "out_bytes_peak": 0, "start": "2021-12-15T15:42:08Z", "end": "2021-12-15T15:42:52Z", "walltime": 44, "usertime": 1.275895, "systemtime": 0.15536, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_BASIC_SC_RNA_COUNTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER", "type": "pipeline", "forks": [ { "stages": [ { "name": "MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS", "forki": 0 }, { "name": "FILTER_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES", "forki": 0 }, { "name": "DISABLE_BAMS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS", "forki": 0 }, { "name": "WRITE_POS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM", "forki": 0 }, { "name": "INFER_GEM_WELL_THROUGHPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT", "forki": 0 }, { "name": "CALL_TAGS_MARGINAL", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL", "forki": 0 }, { "name": "CALL_TAGS_JIBES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES", "forki": 0 }, { "name": "DETERMINE_SAMPLE_ASSIGNMENTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS", "forki": 0 }, { "name": "COMPUTE_EXTRA_MULTIPLEXING_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM", "forki": 0 }, { "name": "MULTI_COLLATE_PER_SAMPLE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS", "forki": 0 }, { "name": "COLLATE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS", "forki": 0 }, { "name": "WRITE_BARCODE_SUMMARY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY", "forki": 0 }, { "name": "WRITE_MATRIX_MARKET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET", "forki": 0 }, { "name": "WRITE_BARCODE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX", "forki": 0 }, { "name": "WRITE_H5_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION", "forki": 0 }, { "name": "SUBSAMPLE_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES", "forki": 0 }, { "name": "INITIAL_ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT", "forki": 0 }, { "name": "SET_TARGETED_UMI_FILTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER", "forki": 0 }, { "name": "SET_ALIGNER_SUBSAMPLE_RATE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE", "forki": 0 }, { "name": "ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS", "forki": 0 }, { "name": "WRITE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO", "forki": 0 }, { "name": "SUBSAMPLE_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS", "forki": 0 }, { "name": "SUMMARIZE_BASIC_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS", "forki": 0 }, { "name": "MULTI_WRITE_PER_SAMPLE_MATRICES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 98, "num_threads": 237, "duration": 17781.725767816, "core_hours": 16.857420819774166, "maxrss": 13714552, "maxvmem": 16022456, "maxrss_requested": 17825792, "maxvmem_requested": 20971520, "in_blocks": 0, "out_blocks": 158229384, "total_blocks": 158229384, "in_blocks_rate": 0, "out_blocks_rate": 8898.426736868643, "total_blocks_rate": 8898.426736868643, "in_bytes": 90937921536, "out_bytes": 0, "in_bytes_rate": 5114122.370540261, "out_bytes_rate": 0, "in_bytes_peak": 2770025113.261957, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T16:25:00Z", "walltime": 2676, "usertime": 51038.60008299998, "systemtime": 2562.7023889999996, "total_files": 196, "total_bytes": 71608235533, "output_files": 80, "output_bytes": 56147787819, "vdr_files": 116, "vdr_bytes": 15460447714, "in_bytes_dev": 8410765.633152628, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "DISABLE_BAMS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS", "type": "stage", "forks": [ { "stages": [ { "name": "DISABLE_BAMS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.14512283, "core_hours": 0.000040311897222222226, "maxrss": 18640, "maxvmem": 1116760, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 551.2571660847573, "total_blocks_rate": 551.2571660847573, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:40:25Z", "walltime": 1, "usertime": 0.044739, "systemtime": 0.009829, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.14512283, "core_hours": 0.000040311897222222226, "maxrss": 18640, "maxvmem": 1116760, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 551.2571660847573, "total_blocks_rate": 551.2571660847573, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:40:25Z", "walltime": 1, "usertime": 0.044739, "systemtime": 0.009829, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "FILTER_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES", "type": "stage", "forks": [ { "stages": [ { "name": "FILTER_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 23.693719212, "core_hours": 0.00658158867, "maxrss": 148876, "maxvmem": 2158308, "maxrss_requested": 8388608, "maxvmem_requested": 11534336, "in_blocks": 0, "out_blocks": 7080, "total_blocks": 7080, "in_blocks_rate": 0, "out_blocks_rate": 298.81336638843254, "total_blocks_rate": 298.81336638843254, "in_bytes": 3108864, "out_bytes": 0, "in_bytes_rate": 131210.46857115932, "out_bytes_rate": 0, "in_bytes_peak": 259645.62670479782, "out_bytes_peak": 0, "start": "2021-12-15T16:10:00Z", "end": "2021-12-15T16:10:24Z", "walltime": 24, "usertime": 1.497611, "systemtime": 0.348308, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 66527.42325783557, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 618.952882428, "core_hours": 0.17193135623, "maxrss": 3084344, "maxvmem": 5234796, "maxrss_requested": 12541952, "maxvmem_requested": 15687680, "in_blocks": 0, "out_blocks": 318504, "total_blocks": 318504, "in_blocks_rate": 0, "out_blocks_rate": 514.5852116409687, "total_blocks_rate": 514.5852116409687, "in_bytes": 155316224, "out_bytes": 0, "in_bytes_rate": 250933.8407000104, "out_bytes_rate": 0, "in_bytes_peak": 8783324.3793468, "out_bytes_peak": 0, "start": "2021-12-15T16:10:24Z", "end": "2021-12-15T16:20:43Z", "walltime": 619, "usertime": 615.496802, "systemtime": 3.327191, "total_files": 5, "total_bytes": 160776000, "output_files": 5, "output_bytes": 160776000, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1058682.3424518742, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 2, "num_threads": 2, "duration": 642.64660164, "core_hours": 0.1785129449, "maxrss": 3084344, "maxvmem": 5234796, "maxrss_requested": 12541952, "maxvmem_requested": 15687680, "in_blocks": 0, "out_blocks": 325584, "total_blocks": 325584, "in_blocks_rate": 0, "out_blocks_rate": 506.62992563739846, "total_blocks_rate": 506.62992563739846, "in_bytes": 158425088, "out_bytes": 0, "in_bytes_rate": 246519.76311040562, "out_bytes_rate": 0, "in_bytes_peak": 8783324.3793468, "out_bytes_peak": 0, "start": "2021-12-15T16:10:00Z", "end": "2021-12-15T16:20:43Z", "walltime": 643, "usertime": 616.994413, "systemtime": 3.675499, "total_files": 13, "total_bytes": 323682995, "output_files": 10, "output_bytes": 321552000, "vdr_files": 3, "vdr_bytes": 2130995, "in_bytes_dev": 22560.677580667354, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS", "type": "stage", "forks": [ { "stages": [ { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.041512573, "core_hours": 0.000011531270277777778, "maxrss": 22604, "maxvmem": 1200576, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 144, "total_blocks": 144, "in_blocks_rate": 0, "out_blocks_rate": 3468.828588389354, "total_blocks_rate": 3468.828588389354, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:25:00Z", "end": "2021-12-15T16:25:00Z", "walltime": 0, "usertime": 0.002523, "systemtime": 0.0063300000000000006, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.041512573, "core_hours": 0.000011531270277777778, "maxrss": 22604, "maxvmem": 1200576, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 144, "total_blocks": 144, "in_blocks_rate": 0, "out_blocks_rate": 3468.828588389354, "total_blocks_rate": 3468.828588389354, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:25:00Z", "end": "2021-12-15T16:25:00Z", "walltime": 0, "usertime": 0.002523, "systemtime": 0.0063300000000000006, "total_files": 1, "total_bytes": 36581, "output_files": 0, "output_bytes": 0, "vdr_files": 1, "vdr_bytes": 36581, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MULTI_COLLATE_PER_SAMPLE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS", "type": "stage", "forks": [ { "stages": [ { "name": "MULTI_COLLATE_PER_SAMPLE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MULTI_WRITE_PER_SAMPLE_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM", "type": "stage", "forks": [ { "stages": [ { "name": "MULTI_WRITE_PER_SAMPLE_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MULTI_WRITE_PER_SAMPLE_MATRICES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES", "type": "stage", "forks": [ { "stages": [ { "name": "MULTI_WRITE_PER_SAMPLE_MATRICES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "type": "stage", "forks": [ { "stages": [ { "name": "MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_POS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_POS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 57.969870057, "core_hours": 0.032205483365, "maxrss": 291036, "maxvmem": 2176416, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1648392, "total_blocks": 1648392, "in_blocks_rate": 0, "out_blocks_rate": 28435.323356412333, "total_blocks_rate": 28435.323356412333, "in_bytes": 810803200, "out_bytes": 0, "in_bytes_rate": 13986631.317316426, "out_bytes_rate": 0, "in_bytes_peak": 15344674.686521778, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:28Z", "walltime": 58, "usertime": 91.544615, "systemtime": 2.2370520000000003, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1488638.9257504866, "out_bytes_dev": 0 } }, { "index": 1, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 68.831402825, "core_hours": 0.03823966823611111, "maxrss": 293984, "maxvmem": 2176196, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1679648, "total_blocks": 1679648, "in_blocks_rate": 0, "out_blocks_rate": 24402.350250951753, "total_blocks_rate": 24402.350250951753, "in_bytes": 811704320, "out_bytes": 0, "in_bytes_rate": 11792645.31428646, "out_bytes_rate": 0, "in_bytes_peak": 15282921.776985008, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:38Z", "walltime": 68, "usertime": 102.34762099999999, "systemtime": 3.102444, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4387500.032059127, "out_bytes_dev": 0 } }, { "index": 2, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 70.860312029, "core_hours": 0.03936684001611111, "maxrss": 293696, "maxvmem": 2109844, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1728320, "total_blocks": 1728320, "in_blocks_rate": 0, "out_blocks_rate": 24390.522007476837, "total_blocks_rate": 24390.522007476837, "in_bytes": 877703168, "out_bytes": 0, "in_bytes_rate": 12386385.874801043, "out_bytes_rate": 0, "in_bytes_peak": 15771008.978345757, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:40Z", "walltime": 70, "usertime": 99.891034, "systemtime": 4.425262, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4835700.443549252, "out_bytes_dev": 0 } }, { "index": 3, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 71.894000222, "core_hours": 0.039941111234444444, "maxrss": 292780, "maxvmem": 2245704, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1762768, "total_blocks": 1762768, "in_blocks_rate": 0, "out_blocks_rate": 24518.986209652892, "total_blocks_rate": 24518.986209652892, "in_bytes": 881811456, "out_bytes": 0, "in_bytes_rate": 12265438.74700354, "out_bytes_rate": 0, "in_bytes_peak": 15275805.988527646, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:41Z", "walltime": 71, "usertime": 103.171598, "systemtime": 5.163515, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4422939.095356043, "out_bytes_dev": 0 } }, { "index": 4, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 72.917182548, "core_hours": 0.04050954586, "maxrss": 293456, "maxvmem": 2109076, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1792088, "total_blocks": 1792088, "in_blocks_rate": 0, "out_blocks_rate": 24577.032976010865, "total_blocks_rate": 24577.032976010865, "in_bytes": 882597888, "out_bytes": 0, "in_bytes_rate": 12104113.97092863, "out_bytes_rate": 0, "in_bytes_peak": 15306431.612653594, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:43Z", "walltime": 73, "usertime": 104.326705, "systemtime": 5.034054, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4388217.348509101, "out_bytes_dev": 0 } }, { "index": 5, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 71.122372735, "core_hours": 0.03951242929722222, "maxrss": 294416, "maxvmem": 2108736, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1798632, "total_blocks": 1798632, "in_blocks_rate": 0, "out_blocks_rate": 25289.257526624613, "total_blocks_rate": 25289.257526624613, "in_bytes": 912670720, "out_bytes": 0, "in_bytes_rate": 12832399.776657986, "out_bytes_rate": 0, "in_bytes_peak": 15322129.427315146, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:41Z", "walltime": 71, "usertime": 102.60217, "systemtime": 4.667889, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4374070.298783014, "out_bytes_dev": 0 } }, { "index": 6, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 71.646056076, "core_hours": 0.039803364486666666, "maxrss": 291928, "maxvmem": 2108764, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1809272, "total_blocks": 1809272, "in_blocks_rate": 0, "out_blocks_rate": 25252.918291563437, "total_blocks_rate": 25252.918291563437, "in_bytes": 907796480, "out_bytes": 0, "in_bytes_rate": 12670571.552983135, "out_bytes_rate": 0, "in_bytes_peak": 15439497.922587596, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:41Z", "walltime": 71, "usertime": 103.125171, "systemtime": 4.723985, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4151810.6826669164, "out_bytes_dev": 0 } }, { "index": 7, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 72.086657699, "core_hours": 0.04004814316611111, "maxrss": 293924, "maxvmem": 2042200, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1788976, "total_blocks": 1788976, "in_blocks_rate": 0, "out_blocks_rate": 24817.019641414405, "total_blocks_rate": 24817.019641414405, "in_bytes": 892334080, "out_bytes": 0, "in_bytes_rate": 12378630.227606997, "out_bytes_rate": 0, "in_bytes_peak": 14952706.36739517, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:42Z", "walltime": 72, "usertime": 104.236037, "systemtime": 5.698687, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4392633.558299992, "out_bytes_dev": 0 } }, { "index": 8, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 71.493008871, "core_hours": 0.039718338261666666, "maxrss": 294148, "maxvmem": 2110040, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1796776, "total_blocks": 1796776, "in_blocks_rate": 0, "out_blocks_rate": 25132.191641871625, "total_blocks_rate": 25132.191641871625, "in_bytes": 906899456, "out_bytes": 0, "in_bytes_rate": 12685148.804359097, "out_bytes_rate": 0, "in_bytes_peak": 15156252.99574795, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:41Z", "walltime": 71, "usertime": 103.6746, "systemtime": 5.516712, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4340635.379571611, "out_bytes_dev": 0 } }, { "index": 9, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 69.205851599, "core_hours": 0.038447695332777775, "maxrss": 291820, "maxvmem": 1837744, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1710184, "total_blocks": 1710184, "in_blocks_rate": 0, "out_blocks_rate": 24711.551992876735, "total_blocks_rate": 24711.551992876735, "in_bytes": 824025088, "out_bytes": 0, "in_bytes_rate": 11906870.141193477, "out_bytes_rate": 0, "in_bytes_peak": 15452890.556378657, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:39Z", "walltime": 69, "usertime": 100.549648, "systemtime": 5.2272, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4367880.038628318, "out_bytes_dev": 0 } }, { "index": 10, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 67.617775666, "core_hours": 0.03756543092555555, "maxrss": 289420, "maxvmem": 2109856, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1893120, "total_blocks": 1893120, "in_blocks_rate": 0, "out_blocks_rate": 27997.37171703373, "total_blocks_rate": 27997.37171703373, "in_bytes": 933048320, "out_bytes": 0, "in_bytes_rate": 13798861.479987448, "out_bytes_rate": 0, "in_bytes_peak": 16348373.190039508, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:37Z", "walltime": 67, "usertime": 99.511872, "systemtime": 2.785616, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4411348.059816151, "out_bytes_dev": 0 } }, { "index": 11, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 68.406148679, "core_hours": 0.03800341593277778, "maxrss": 293520, "maxvmem": 2177204, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1922048, "total_blocks": 1922048, "in_blocks_rate": 0, "out_blocks_rate": 28097.591183203822, "total_blocks_rate": 28097.591183203822, "in_bytes": 934244352, "out_bytes": 0, "in_bytes_rate": 13657315.461275248, "out_bytes_rate": 0, "in_bytes_peak": 17186218.93007062, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:38Z", "walltime": 68, "usertime": 94.750554, "systemtime": 5.15922, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4756550.259525224, "out_bytes_dev": 0 } }, { "index": 12, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 65.649230065, "core_hours": 0.036471794480555556, "maxrss": 292952, "maxvmem": 2175792, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1870856, "total_blocks": 1870856, "in_blocks_rate": 0, "out_blocks_rate": 28497.75996074357, "total_blocks_rate": 28497.75996074357, "in_bytes": 956071936, "out_bytes": 0, "in_bytes_rate": 14563338.13897563, "out_bytes_rate": 0, "in_bytes_peak": 17187112.028481517, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:35Z", "walltime": 65, "usertime": 96.02695899999999, "systemtime": 4.686715, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4700288.738355396, "out_bytes_dev": 0 } }, { "index": 13, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 63.844594904, "core_hours": 0.03546921939111111, "maxrss": 252940, "maxvmem": 2177008, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 1817968, "total_blocks": 1817968, "in_blocks_rate": 0, "out_blocks_rate": 28474.89286655495, "total_blocks_rate": 28474.89286655495, "in_bytes": 875827200, "out_bytes": 0, "in_bytes_rate": 13718110.379068715, "out_bytes_rate": 0, "in_bytes_peak": 16347990.377673024, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:33Z", "walltime": 63, "usertime": 93.164224, "systemtime": 3.88759, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4624179.934894345, "out_bytes_dev": 0 } }, { "index": 14, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 74.275580052, "core_hours": 0.04126421114, "maxrss": 293472, "maxvmem": 2109292, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 2163968, "total_blocks": 2163968, "in_blocks_rate": 0, "out_blocks_rate": 29134.313033772552, "total_blocks_rate": 29134.313033772552, "in_bytes": 1045254144, "out_bytes": 0, "in_bytes_rate": 14072648.685721772, "out_bytes_rate": 0, "in_bytes_peak": 17111281.63508931, "out_bytes_peak": 0, "start": "2021-12-15T16:09:30Z", "end": "2021-12-15T16:10:44Z", "walltime": 74, "usertime": 108.880685, "systemtime": 4.877076000000001, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4080475.3768493193, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.189242986, "core_hours": 0.00005256749611111111, "maxrss": 22168, "maxvmem": 1131580, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 422.7369356769714, "total_blocks_rate": 422.7369356769714, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:09:29Z", "end": "2021-12-15T16:09:29Z", "walltime": 0, "usertime": 0.023821000000000002, "systemtime": 0.137517, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 4, "duration": 54.590487084, "core_hours": 0.06065609676, "maxrss": 37836, "maxvmem": 2140168, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 27190304, "total_blocks": 27190304, "in_blocks_rate": 0, "out_blocks_rate": 498077.69544465636, "total_blocks_rate": 498077.69544465636, "in_bytes": 27833974784, "out_bytes": 0, "in_bytes_rate": 509868591.96128875, "out_bytes_rate": 0, "in_bytes_peak": 2770025113.261957, "out_bytes_peak": 0, "start": "2021-12-15T16:10:44Z", "end": "2021-12-15T16:11:39Z", "walltime": 55, "usertime": 157.2858, "systemtime": 11.903781, "total_files": 2, "total_bytes": 13921382679, "output_files": 2, "output_bytes": 13921382679, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1002459883.4122576, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 17, "num_threads": 35, "duration": 1092.599774097, "core_hours": 0.6372753553822221, "maxrss": 294416, "maxvmem": 2245704, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 54373400, "total_blocks": 54373400, "in_blocks_rate": 0, "out_blocks_rate": 49765.15764424163, "total_blocks_rate": 49765.15764424163, "in_bytes": 41286766592, "out_bytes": 0, "in_bytes_rate": 37787639.69278892, "out_bytes_rate": 0, "in_bytes_peak": 2770025113.261957, "out_bytes_peak": 0, "start": "2021-12-15T16:09:29Z", "end": "2021-12-15T16:11:39Z", "walltime": 130, "usertime": 1665.1131140000002, "systemtime": 79.23431499999998, "total_files": 19, "total_bytes": 41759757033, "output_files": 4, "output_bytes": 27842765358, "vdr_files": 15, "vdr_bytes": 13916991675, "in_bytes_dev": 108264914.8695686, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_ASSIGN_TAGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS", "type": "pipeline", "forks": [ { "stages": [ { "name": "INFER_GEM_WELL_THROUGHPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT", "forki": 0 }, { "name": "CALL_TAGS_MARGINAL", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL", "forki": 0 }, { "name": "CALL_TAGS_JIBES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES", "forki": 0 }, { "name": "DETERMINE_SAMPLE_ASSIGNMENTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS", "forki": 0 }, { "name": "COMPUTE_EXTRA_MULTIPLEXING_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 10, "num_threads": 13, "duration": 52.384080998, "core_hours": 0.016923252214722226, "maxrss": 689088, "maxvmem": 2270632, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 14824, "total_blocks": 14824, "in_blocks_rate": 0, "out_blocks_rate": 282.98673409133534, "total_blocks_rate": 282.98673409133534, "in_bytes": 6582272, "out_bytes": 0, "in_bytes_rate": 125654.051280413, "out_bytes_rate": 0, "in_bytes_peak": 242447.15475114057, "out_bytes_peak": 0, "start": "2021-12-15T16:20:43Z", "end": "2021-12-15T16:23:21Z", "walltime": 158, "usertime": 11.442734, "systemtime": 1.852561, "total_files": 1, "total_bytes": 2, "output_files": 1, "output_bytes": 2, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 61849.453085658664, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CALL_TAGS_JIBES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES", "type": "stage", "forks": [ { "stages": [ { "name": "CALL_TAGS_JIBES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 37.996035079, "core_hours": 0.010554454188611112, "maxrss": 184940, "maxvmem": 2270632, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 13384, "total_blocks": 13384, "in_blocks_rate": 0, "out_blocks_rate": 352.2472798062341, "total_blocks_rate": 352.2472798062341, "in_bytes": 6463488, "out_bytes": 0, "in_bytes_rate": 170109.5387074295, "out_bytes_rate": 0, "in_bytes_peak": 242447.15475114057, "out_bytes_peak": 0, "start": "2021-12-15T16:22:37Z", "end": "2021-12-15T16:23:15Z", "walltime": 38, "usertime": 1.6640089999999998, "systemtime": 0.271933, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 56252.52507010733, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 4, "duration": 2.846542325, "core_hours": 0.0031628248055555557, "maxrss": 689088, "maxvmem": 1778532, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 25.293844875466586, "total_blocks_rate": 25.293844875466586, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 2877.8774613864207, "out_bytes_rate": 0, "in_bytes_peak": 16287.295745093897, "out_bytes_peak": 0, "start": "2021-12-15T16:23:15Z", "end": "2021-12-15T16:23:18Z", "walltime": 3, "usertime": 2.4813799999999997, "systemtime": 0.226874, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1266.5394087515856, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 2, "num_threads": 5, "duration": 40.842577404000004, "core_hours": 0.013717278994166669, "maxrss": 689088, "maxvmem": 2270632, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 13456, "total_blocks": 13456, "in_blocks_rate": 0, "out_blocks_rate": 329.4601089176649, "total_blocks_rate": 329.4601089176649, "in_bytes": 6471680, "out_bytes": 0, "in_bytes_rate": 158454.250719402, "out_bytes_rate": 0, "in_bytes_peak": 242447.15475114057, "out_bytes_peak": 0, "start": "2021-12-15T16:22:37Z", "end": "2021-12-15T16:23:18Z", "walltime": 41, "usertime": 4.145389, "systemtime": 0.498807, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 42582.712859269835, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CALL_TAGS_MARGINAL", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL", "type": "stage", "forks": [ { "stages": [ { "name": "CALL_TAGS_MARGINAL", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 1.085783784, "core_hours": 0.00030160660666666666, "maxrss": 155724, "maxvmem": 1814852, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 73.67949418555693, "total_blocks_rate": 73.67949418555693, "in_bytes": 12288, "out_bytes": 0, "in_bytes_rate": 11317.170306901544, "out_bytes_rate": 0, "in_bytes_peak": 24433.460712167336, "out_bytes_peak": 0, "start": "2021-12-15T16:20:48Z", "end": "2021-12-15T16:20:49Z", "walltime": 1, "usertime": 0.765208, "systemtime": 0.248905, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1954.778563370713, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 2.685650843, "core_hours": 0.0007460141230555556, "maxrss": 669120, "maxvmem": 1901120, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 26.809143931596324, "total_blocks_rate": 26.809143931596324, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 3050.2848206616263, "out_bytes_rate": 0, "in_bytes_peak": 16287.978943651595, "out_bytes_peak": 0, "start": "2021-12-15T16:20:49Z", "end": "2021-12-15T16:20:52Z", "walltime": 3, "usertime": 2.325652, "systemtime": 0.33054300000000003, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1336.6477907937976, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 2, "num_threads": 2, "duration": 3.7714346269999997, "core_hours": 0.0010476207297222223, "maxrss": 669120, "maxvmem": 1901120, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 152, "total_blocks": 152, "in_blocks_rate": 0, "out_blocks_rate": 40.30296559081787, "total_blocks_rate": 40.30296559081787, "in_bytes": 20480, "out_bytes": 0, "in_bytes_rate": 5430.294311183881, "out_bytes_rate": 0, "in_bytes_peak": 24433.460712167336, "out_bytes_peak": 0, "start": "2021-12-15T16:20:48Z", "end": "2021-12-15T16:20:52Z", "walltime": 4, "usertime": 3.0908599999999997, "systemtime": 0.579448, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 3743.103089595006, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "COMPUTE_EXTRA_MULTIPLEXING_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS", "type": "stage", "forks": [ { "stages": [ { "name": "COMPUTE_EXTRA_MULTIPLEXING_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.610060023, "core_hours": 0.00016946111749999997, "maxrss": 84172, "maxvmem": 1814696, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 88, "total_blocks": 88, "in_blocks_rate": 0, "out_blocks_rate": 144.2481013052711, "total_blocks_rate": 144.2481013052711, "in_bytes": 16384, "out_bytes": 0, "in_bytes_rate": 26856.37377029047, "out_bytes_rate": 0, "in_bytes_peak": 32574.736175056503, "out_bytes_peak": 0, "start": "2021-12-15T16:23:20Z", "end": "2021-12-15T16:23:20Z", "walltime": 0, "usertime": 0.429521, "systemtime": 0.059719, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2606.8134992839664, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.590243397, "core_hours": 0.00016395649916666665, "maxrss": 87360, "maxvmem": 1820248, "maxrss_requested": 2868224, "maxvmem_requested": 6013952, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 121.98357553163785, "total_blocks_rate": 121.98357553163785, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 13879.020149377462, "out_bytes_rate": 0, "in_bytes_peak": 16281.567513795379, "out_bytes_peak": 0, "start": "2021-12-15T16:23:20Z", "end": "2021-12-15T16:23:21Z", "walltime": 1, "usertime": 0.375609, "systemtime": 0.095302, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1325.7281739490163, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 2, "num_threads": 2, "duration": 1.20030342, "core_hours": 0.00033341761666666665, "maxrss": 87360, "maxvmem": 1820248, "maxrss_requested": 2868224, "maxvmem_requested": 6013952, "in_blocks": 0, "out_blocks": 160, "total_blocks": 160, "in_blocks_rate": 0, "out_blocks_rate": 133.2996285222615, "total_blocks_rate": 133.2996285222615, "in_bytes": 24576, "out_bytes": 0, "in_bytes_rate": 20474.822941019363, "out_bytes_rate": 0, "in_bytes_peak": 32574.736175056503, "out_bytes_peak": 0, "start": "2021-12-15T16:23:20Z", "end": "2021-12-15T16:23:21Z", "walltime": 1, "usertime": 0.80513, "systemtime": 0.155021, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 6487.792442326671, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "DETERMINE_SAMPLE_ASSIGNMENTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS", "type": "stage", "forks": [ { "stages": [ { "name": "DETERMINE_SAMPLE_ASSIGNMENTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 1.545759189, "core_hours": 0.0004293775525, "maxrss": 70988, "maxvmem": 1676180, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 296, "total_blocks": 296, "in_blocks_rate": 0, "out_blocks_rate": 191.49166448849752, "total_blocks_rate": 191.49166448849752, "in_bytes": 45056, "out_bytes": 0, "in_bytes_rate": 29148.13660538427, "out_bytes_rate": 0, "in_bytes_peak": 89585.85849047937, "out_bytes_peak": 0, "start": "2021-12-15T16:23:18Z", "end": "2021-12-15T16:23:19Z", "walltime": 1, "usertime": 0.314342, "systemtime": 0.047752, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 7514.005049499468, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 1.545759189, "core_hours": 0.0004293775525, "maxrss": 70988, "maxvmem": 1676180, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 296, "total_blocks": 296, "in_blocks_rate": 0, "out_blocks_rate": 191.49166448849752, "total_blocks_rate": 191.49166448849752, "in_bytes": 45056, "out_bytes": 0, "in_bytes_rate": 29148.13660538427, "out_bytes_rate": 0, "in_bytes_peak": 89585.85849047937, "out_bytes_peak": 0, "start": "2021-12-15T16:23:18Z", "end": "2021-12-15T16:23:19Z", "walltime": 1, "usertime": 0.314342, "systemtime": 0.047752, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "INFER_GEM_WELL_THROUGHPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT", "type": "stage", "forks": [ { "stages": [ { "name": "INFER_GEM_WELL_THROUGHPUT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 2.355404113, "core_hours": 0.0006542789202777778, "maxrss": 157972, "maxvmem": 1804220, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 608, "total_blocks": 608, "in_blocks_rate": 0, "out_blocks_rate": 258.12980313837124, "total_blocks_rate": 258.12980313837124, "in_bytes": 12288, "out_bytes": 0, "in_bytes_rate": 5216.939179217608, "out_bytes_rate": 0, "in_bytes_peak": 24423.679330335784, "out_bytes_peak": 0, "start": "2021-12-15T16:20:43Z", "end": "2021-12-15T16:20:45Z", "walltime": 2, "usertime": 0.779675, "systemtime": 0.250959, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1971.43858799425, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 2.6416123110000003, "core_hours": 0.0007337811975, "maxrss": 669256, "maxvmem": 1845552, "maxrss_requested": 2726912, "maxvmem_requested": 5872640, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 27.256081333427733, "total_blocks_rate": 27.256081333427733, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 3101.1363650477774, "out_bytes_rate": 0, "in_bytes_peak": 16267.304958751729, "out_bytes_peak": 0, "start": "2021-12-15T16:20:46Z", "end": "2021-12-15T16:20:48Z", "walltime": 2, "usertime": 2.299579, "systemtime": 0.320574, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1344.6247407999488, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 2, "num_threads": 2, "duration": 4.997016424, "core_hours": 0.001388060117777778, "maxrss": 669256, "maxvmem": 1845552, "maxrss_requested": 2726912, "maxvmem_requested": 5872640, "in_blocks": 0, "out_blocks": 680, "total_blocks": 680, "in_blocks_rate": 0, "out_blocks_rate": 136.0812017215015, "total_blocks_rate": 136.0812017215015, "in_bytes": 20480, "out_bytes": 0, "in_bytes_rate": 4098.445604788751, "out_bytes_rate": 0, "in_bytes_peak": 24423.679330335784, "out_bytes_peak": 0, "start": "2021-12-15T16:20:43Z", "end": "2021-12-15T16:20:48Z", "walltime": 5, "usertime": 3.079254, "systemtime": 0.5715330000000001, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1056.164748686872, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS", "type": "stage", "forks": [ { "stages": [ { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.026989934, "core_hours": 0.000007497203888888889, "maxrss": 22604, "maxvmem": 1131600, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 2964.0680114297425, "total_blocks_rate": 2964.0680114297425, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:21Z", "end": "2021-12-15T16:23:21Z", "walltime": 0, "usertime": 0.007759, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.026989934, "core_hours": 0.000007497203888888889, "maxrss": 22604, "maxvmem": 1131600, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 2964.0680114297425, "total_blocks_rate": 2964.0680114297425, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:21Z", "end": "2021-12-15T16:23:21Z", "walltime": 0, "usertime": 0.007759, "systemtime": 0, "total_files": 1, "total_bytes": 2, "output_files": 0, "output_bytes": 0, "vdr_files": 1, "vdr_bytes": 2, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_CELLS_REPORTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER", "type": "pipeline", "forks": [ { "stages": [ { "name": "WRITE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO", "forki": 0 }, { "name": "SUBSAMPLE_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS", "forki": 0 }, { "name": "SUMMARIZE_BASIC_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 16, "num_threads": 16, "duration": 1223.3467592309999, "core_hours": 0.3398185442308333, "maxrss": 1548700, "maxvmem": 3517464, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 1724008, "total_blocks": 1724008, "in_blocks_rate": 0, "out_blocks_rate": 1409.2553783227559, "total_blocks_rate": 1409.2553783227559, "in_bytes": 477810688, "out_bytes": 0, "in_bytes_rate": 390576.6573496737, "out_bytes_rate": 0, "in_bytes_peak": 11899169.553411251, "out_bytes_peak": 0, "start": "2021-12-15T16:20:43Z", "end": "2021-12-15T16:25:00Z", "walltime": 257, "usertime": 1075.4490239999998, "systemtime": 107.24554, "total_files": 16, "total_bytes": 880228148, "output_files": 3, "output_bytes": 437453543, "vdr_files": 13, "vdr_bytes": 442774605, "in_bytes_dev": 1011977.8384991715, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUBSAMPLE_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS", "type": "stage", "forks": [ { "stages": [ { "name": "SUBSAMPLE_READS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 100.738718323, "core_hours": 0.027982977311944445, "maxrss": 1034356, "maxvmem": 3059260, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 72168, "total_blocks": 72168, "in_blocks_rate": 0, "out_blocks_rate": 716.3879112359431, "total_blocks_rate": 716.3879112359431, "in_bytes": 36925440, "out_bytes": 0, "in_bytes_rate": 366546.65271405806, "out_bytes_rate": 0, "in_bytes_peak": 7346464.840978122, "out_bytes_peak": 0, "start": "2021-12-15T16:22:46Z", "end": "2021-12-15T16:24:26Z", "walltime": 100, "usertime": 92.946134, "systemtime": 3.72375, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1599722.1024777263, "out_bytes_dev": 0 } }, { "index": 1, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 100.687212145, "core_hours": 0.02796867004027778, "maxrss": 1034832, "maxvmem": 3071704, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 72168, "total_blocks": 72168, "in_blocks_rate": 0, "out_blocks_rate": 716.7543768723143, "total_blocks_rate": 716.7543768723143, "in_bytes": 36925440, "out_bytes": 0, "in_bytes_rate": 366734.158324133, "out_bytes_rate": 0, "in_bytes_peak": 7382416.55482775, "out_bytes_peak": 0, "start": "2021-12-15T16:22:46Z", "end": "2021-12-15T16:24:26Z", "walltime": 100, "usertime": 93.036725, "systemtime": 3.396166, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1604194.5891646666, "out_bytes_dev": 0 } }, { "index": 2, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 98.76059049, "core_hours": 0.027433497358333333, "maxrss": 1035028, "maxvmem": 3031032, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 72168, "total_blocks": 72168, "in_blocks_rate": 0, "out_blocks_rate": 730.7368216607349, "total_blocks_rate": 730.7368216607349, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 82.94806622110548, "out_bytes_rate": 0, "in_bytes_peak": 16281.495837705748, "out_bytes_peak": 0, "start": "2021-12-15T16:22:46Z", "end": "2021-12-15T16:24:24Z", "walltime": 98, "usertime": 91.19105900000001, "systemtime": 3.415689, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1177.7676348692103, "out_bytes_dev": 0 } }, { "index": 3, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 105.48306629, "core_hours": 0.02930085174722222, "maxrss": 1034528, "maxvmem": 2959704, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 72168, "total_blocks": 72168, "in_blocks_rate": 0, "out_blocks_rate": 684.1666870167735, "total_blocks_rate": 684.1666870167735, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 77.66175451781133, "out_bytes_rate": 0, "in_bytes_peak": 16283.486726084062, "out_bytes_peak": 0, "start": "2021-12-15T16:22:46Z", "end": "2021-12-15T16:24:31Z", "walltime": 105, "usertime": 98.040164, "systemtime": 3.4856019999999996, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1148.3149251330856, "out_bytes_dev": 0 } }, { "index": 4, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 98.271177004, "core_hours": 0.027297549167777775, "maxrss": 1034236, "maxvmem": 3005564, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 72168, "total_blocks": 72168, "in_blocks_rate": 0, "out_blocks_rate": 734.3760622411443, "total_blocks_rate": 734.3760622411443, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 83.36116702526678, "out_bytes_rate": 0, "in_bytes_peak": 16282.711083559743, "out_bytes_peak": 0, "start": "2021-12-15T16:22:46Z", "end": "2021-12-15T16:24:24Z", "walltime": 98, "usertime": 91.48243500000001, "systemtime": 3.544302, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1177.5535369547445, "out_bytes_dev": 0 } }, { "index": 5, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 100.668328156, "core_hours": 0.027963424487777777, "maxrss": 1035584, "maxvmem": 3005420, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 72168, "total_blocks": 72168, "in_blocks_rate": 0, "out_blocks_rate": 716.8888301012146, "total_blocks_rate": 716.8888301012146, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 81.37614034182948, "out_bytes_rate": 0, "in_bytes_peak": 16288.770083865114, "out_bytes_peak": 0, "start": "2021-12-15T16:22:46Z", "end": "2021-12-15T16:24:26Z", "walltime": 100, "usertime": 92.916146, "systemtime": 3.605371, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1148.4782887728043, "out_bytes_dev": 0 } }, { "index": 6, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 103.568709515, "core_hours": 0.028769085976388886, "maxrss": 1042604, "maxvmem": 3178072, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 72168, "total_blocks": 72168, "in_blocks_rate": 0, "out_blocks_rate": 696.8127761555995, "total_blocks_rate": 696.8127761555995, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 79.09724895059682, "out_bytes_rate": 0, "in_bytes_peak": 16296.246991425753, "out_bytes_peak": 0, "start": "2021-12-15T16:22:46Z", "end": "2021-12-15T16:24:29Z", "walltime": 103, "usertime": 96.339125, "systemtime": 3.514761, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1148.8396318919495, "out_bytes_dev": 0 } }, { "index": 7, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 102.579342294, "core_hours": 0.028494261748333333, "maxrss": 1035936, "maxvmem": 3095172, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 72168, "total_blocks": 72168, "in_blocks_rate": 0, "out_blocks_rate": 703.5334638153671, "total_blocks_rate": 703.5334638153671, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 79.86013379303135, "out_bytes_rate": 0, "in_bytes_peak": 16288.094494298577, "out_bytes_peak": 0, "start": "2021-12-15T16:22:46Z", "end": "2021-12-15T16:24:28Z", "walltime": 102, "usertime": 95.10649500000001, "systemtime": 3.5473039999999996, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1148.327252207463, "out_bytes_dev": 0 } }, { "index": 8, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 101.320192445, "core_hours": 0.02814449790138889, "maxrss": 1035248, "maxvmem": 3006360, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 72168, "total_blocks": 72168, "in_blocks_rate": 0, "out_blocks_rate": 712.27657842414, "total_blocks_rate": 712.27657842414, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 80.85259021242871, "out_bytes_rate": 0, "in_bytes_peak": 16319.570076225938, "out_bytes_peak": 0, "start": "2021-12-15T16:22:46Z", "end": "2021-12-15T16:24:27Z", "walltime": 101, "usertime": 94.120902, "systemtime": 3.3828840000000002, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1149.7009314779516, "out_bytes_dev": 0 } }, { "index": 9, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 105.641847116, "core_hours": 0.02934495753222222, "maxrss": 1034484, "maxvmem": 2833740, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 72168, "total_blocks": 72168, "in_blocks_rate": 0, "out_blocks_rate": 683.1383771693802, "total_blocks_rate": 683.1383771693802, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 77.54502807021896, "out_bytes_rate": 0, "in_bytes_peak": 16329.690161252242, "out_bytes_peak": 0, "start": "2021-12-15T16:22:46Z", "end": "2021-12-15T16:24:31Z", "walltime": 105, "usertime": 98.187193, "systemtime": 3.560606, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1150.1166815458773, "out_bytes_dev": 0 } }, { "index": 10, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 54.581827785, "core_hours": 0.015161618829166668, "maxrss": 673588, "maxvmem": 2535772, "maxrss_requested": 3145728, "maxvmem_requested": 6291456, "in_blocks": 0, "out_blocks": 72168, "total_blocks": 72168, "in_blocks_rate": 0, "out_blocks_rate": 1322.1983016815163, "total_blocks_rate": 1322.1983016815163, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 150.08658252099244, "out_bytes_rate": 0, "in_bytes_peak": 16307.736933461612, "out_bytes_peak": 0, "start": "2021-12-15T16:22:46Z", "end": "2021-12-15T16:23:40Z", "walltime": 54, "usertime": 52.097581, "systemtime": 1.962263, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1617.733027259602, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 8.795198795, "core_hours": 0.0024431107763888886, "maxrss": 114256, "maxvmem": 1904500, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 480, "total_blocks": 480, "in_blocks_rate": 0, "out_blocks_rate": 54.57523032599061, "total_blocks_rate": 54.57523032599061, "in_bytes": 32768, "out_bytes": 0, "in_bytes_rate": 3725.6690569209586, "out_bytes_rate": 0, "in_bytes_peak": 24467.823543647883, "out_bytes_peak": 0, "start": "2021-12-15T16:22:37Z", "end": "2021-12-15T16:22:46Z", "walltime": 9, "usertime": 8.540267, "systemtime": 0.082883, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 5866.919019837516, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 1.634856513, "core_hours": 0.0004541268091666666, "maxrss": 197496, "maxvmem": 1856348, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 72200, "total_blocks": 72200, "in_blocks_rate": 0, "out_blocks_rate": 44162.89712637307, "total_blocks_rate": 44162.89712637307, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 5010.837302759671, "out_bytes_rate": 0, "in_bytes_peak": 16286.305327163196, "out_bytes_peak": 0, "start": "2021-12-15T16:24:31Z", "end": "2021-12-15T16:24:33Z", "walltime": 2, "usertime": 1.072472, "systemtime": 0.257676, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1769.894490977237, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 13, "num_threads": 13, "duration": 1082.731066871, "core_hours": 0.30075862968638883, "maxrss": 1042604, "maxvmem": 3178072, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 866528, "total_blocks": 866528, "in_blocks_rate": 0, "out_blocks_rate": 800.3169268100819, "total_blocks_rate": 800.3169268100819, "in_bytes": 73965568, "out_bytes": 0, "in_bytes_rate": 68313.88722755888, "out_bytes_rate": 0, "in_bytes_peak": 7382416.55482775, "out_bytes_peak": 0, "start": "2021-12-15T16:22:37Z", "end": "2021-12-15T16:24:33Z", "walltime": 116, "usertime": 1005.0766979999999, "systemtime": 37.479257000000004, "total_files": 13, "total_bytes": 442774605, "output_files": 0, "output_bytes": 0, "vdr_files": 13, "vdr_bytes": 442774605, "in_bytes_dev": 142622.4544213966, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUMMARIZE_BASIC_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS", "type": "stage", "forks": [ { "stages": [ { "name": "SUMMARIZE_BASIC_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.804208943, "core_hours": 0.00022339137305555555, "maxrss": 101804, "maxvmem": 1680852, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 144, "total_blocks": 144, "in_blocks_rate": 0, "out_blocks_rate": 179.05794414922343, "total_blocks_rate": 179.05794414922343, "in_bytes": 28672, "out_bytes": 0, "in_bytes_rate": 35652.42621282315, "out_bytes_rate": 0, "in_bytes_peak": 57079.70237004372, "out_bytes_peak": 0, "start": "2021-12-15T16:24:33Z", "end": "2021-12-15T16:24:34Z", "walltime": 1, "usertime": 0.506786, "systemtime": 0.085918, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 5049.919005437484, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 26.136902475, "core_hours": 0.0072602506875, "maxrss": 1548700, "maxvmem": 3480612, "maxrss_requested": 7340032, "maxvmem_requested": 10485760, "in_blocks": 0, "out_blocks": 160, "total_blocks": 160, "in_blocks_rate": 0, "out_blocks_rate": 6.121612924601158, "total_blocks_rate": 6.121612924601158, "in_bytes": 16384, "out_bytes": 0, "in_bytes_rate": 626.8531634791586, "out_bytes_rate": 0, "in_bytes_peak": 16288.244472933586, "out_bytes_peak": 0, "start": "2021-12-15T16:24:34Z", "end": "2021-12-15T16:25:00Z", "walltime": 26, "usertime": 24.473657, "systemtime": 1.594467, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2311.696761912184, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 2, "num_threads": 2, "duration": 26.941111418, "core_hours": 0.007483642060555556, "maxrss": 1548700, "maxvmem": 3480612, "maxrss_requested": 7340032, "maxvmem_requested": 10485760, "in_blocks": 0, "out_blocks": 304, "total_blocks": 304, "in_blocks_rate": 0, "out_blocks_rate": 11.283870040969814, "total_blocks_rate": 11.283870040969814, "in_bytes": 45056, "out_bytes": 0, "in_bytes_rate": 1672.3883176511054, "out_bytes_rate": 0, "in_bytes_peak": 57079.70237004372, "out_bytes_peak": 0, "start": "2021-12-15T16:24:33Z", "end": "2021-12-15T16:25:00Z", "walltime": 27, "usertime": 24.980443, "systemtime": 1.680385, "total_files": 1, "total_bytes": 36590, "output_files": 0, "output_bytes": 0, "vdr_files": 1, "vdr_bytes": 36590, "in_bytes_dev": 5960.48019537833, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_MOLECULE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 113.674580942, "core_hours": 0.03157627248388889, "maxrss": 1441420, "maxvmem": 3517464, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 857176, "total_blocks": 857176, "in_blocks_rate": 0, "out_blocks_rate": 7540.612799244499, "total_blocks_rate": 7540.612799244499, "in_bytes": 403800064, "out_bytes": 0, "in_bytes_rate": 3552245.899248401, "out_bytes_rate": 0, "in_bytes_peak": 11899169.553411251, "out_bytes_peak": 0, "start": "2021-12-15T16:20:43Z", "end": "2021-12-15T16:22:37Z", "walltime": 114, "usertime": 45.391883, "systemtime": 68.085898, "total_files": 1, "total_bytes": 437380363, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 5265267.260742942, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 113.674580942, "core_hours": 0.03157627248388889, "maxrss": 1441420, "maxvmem": 3517464, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 857176, "total_blocks": 857176, "in_blocks_rate": 0, "out_blocks_rate": 7540.612799244499, "total_blocks_rate": 7540.612799244499, "in_bytes": 403800064, "out_bytes": 0, "in_bytes_rate": 3552245.899248401, "out_bytes_rate": 0, "in_bytes_peak": 11899169.553411251, "out_bytes_peak": 0, "start": "2021-12-15T16:20:43Z", "end": "2021-12-15T16:22:37Z", "walltime": 114, "usertime": 45.391883, "systemtime": 68.085898, "total_files": 2, "total_bytes": 437380450, "output_files": 1, "output_bytes": 437380363, "vdr_files": 1, "vdr_bytes": 87, "in_bytes_dev": 0.04419417382415922, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_MATRIX_COMPUTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER", "type": "pipeline", "forks": [ { "stages": [ { "name": "SUBSAMPLE_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES", "forki": 0 }, { "name": "INITIAL_ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT", "forki": 0 }, { "name": "SET_TARGETED_UMI_FILTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER", "forki": 0 }, { "name": "SET_ALIGNER_SUBSAMPLE_RATE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE", "forki": 0 }, { "name": "ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT", "forki": 0 }, { "name": "WRITE_BARCODE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX", "forki": 0 }, { "name": "WRITE_H5_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS", "forki": 0 }, { "name": "WRITE_MATRIX_MARKET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET", "forki": 0 }, { "name": "COLLATE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS", "forki": 0 }, { "name": "WRITE_BARCODE_SUMMARY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 51, "num_threads": 169, "duration": 14770.561916446999, "core_hours": 15.684838879878887, "maxrss": 13714552, "maxvmem": 16022456, "maxrss_requested": 17825792, "maxvmem_requested": 20971520, "in_blocks": 0, "out_blocks": 101791344, "total_blocks": 101791344, "in_blocks_rate": 0, "out_blocks_rate": 6891.501120661867, "total_blocks_rate": 6891.501120661867, "in_bytes": 49008336896, "out_bytes": 0, "in_bytes_rate": 3317973.762489651, "out_bytes_rate": 0, "in_bytes_peak": 32808518.781958297, "out_bytes_peak": 0, "start": "2021-12-15T15:42:52Z", "end": "2021-12-15T16:11:10Z", "walltime": 1698, "usertime": 47669.553535999985, "systemtime": 2370.6783149999997, "total_files": 147, "total_bytes": 28645786105, "output_files": 59, "output_bytes": 27545104671, "vdr_files": 88, "vdr_bytes": 1100681434, "in_bytes_dev": 5008389.020123158, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT", "type": "stage", "forks": [ { "stages": [ { "name": "ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 287.004259146, "core_hours": 0.3188936212733333, "maxrss": 12585704, "maxvmem": 14670584, "maxrss_requested": 15728640, "maxvmem_requested": 18874368, "in_blocks": 0, "out_blocks": 907368, "total_blocks": 907368, "in_blocks_rate": 0, "out_blocks_rate": 3161.5140580140974, "total_blocks_rate": 3161.5140580140974, "in_bytes": 464531456, "out_bytes": 0, "in_bytes_rate": 1618552.4820511162, "out_bytes_rate": 0, "in_bytes_peak": 6891894.891893328, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T15:52:44Z", "walltime": 287, "usertime": 721.769002, "systemtime": 115.487864, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2552581.7144298214, "out_bytes_dev": 0 } }, { "index": 1, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 888.647370186, "core_hours": 0.9873859668733334, "maxrss": 13522544, "maxvmem": 15552292, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 3562992, "total_blocks": 3562992, "in_blocks_rate": 0, "out_blocks_rate": 4009.4554032768265, "total_blocks_rate": 4009.4554032768265, "in_bytes": 1754546176, "out_bytes": 0, "in_bytes_rate": 1974400.9095900003, "out_bytes_rate": 0, "in_bytes_peak": 6160494.427352371, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:02:45Z", "walltime": 888, "usertime": 3110.175532, "systemtime": 119.491039, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2555916.700588775, "out_bytes_dev": 0 } }, { "index": 2, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 1135.183258807, "core_hours": 1.2613147320077778, "maxrss": 13684728, "maxvmem": 15806672, "maxrss_requested": 17825792, "maxvmem_requested": 20971520, "in_blocks": 0, "out_blocks": 4863976, "total_blocks": 4863976, "in_blocks_rate": 0, "out_blocks_rate": 4284.749587579107, "total_blocks_rate": 4284.749587579107, "in_bytes": 2382196736, "out_bytes": 0, "in_bytes_rate": 2098512.920727466, "out_bytes_rate": 0, "in_bytes_peak": 6318257.8033058755, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:06:52Z", "walltime": 1135, "usertime": 4016.966051, "systemtime": 152.000922, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2590888.178111237, "out_bytes_dev": 0 } }, { "index": 3, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 990.023020176, "core_hours": 1.1000255779733334, "maxrss": 13714552, "maxvmem": 15942512, "maxrss_requested": 17825792, "maxvmem_requested": 20971520, "in_blocks": 0, "out_blocks": 4008752, "total_blocks": 4008752, "in_blocks_rate": 0, "out_blocks_rate": 4049.150290755208, "total_blocks_rate": 4049.150290755208, "in_bytes": 1962078208, "out_bytes": 0, "in_bytes_rate": 1981851.0964029848, "out_bytes_rate": 0, "in_bytes_peak": 6402825.678388575, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:04:27Z", "walltime": 990, "usertime": 3458.127405, "systemtime": 153.596273, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2579490.966752747, "out_bytes_dev": 0 } }, { "index": 4, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 973.92996328, "core_hours": 1.0821444036444445, "maxrss": 13642776, "maxvmem": 15815144, "maxrss_requested": 17825792, "maxvmem_requested": 20971520, "in_blocks": 0, "out_blocks": 3972224, "total_blocks": 3972224, "in_blocks_rate": 0, "out_blocks_rate": 4078.552000415255, "total_blocks_rate": 4078.552000415255, "in_bytes": 1996386304, "out_bytes": 0, "in_bytes_rate": 2049825.3255055146, "out_bytes_rate": 0, "in_bytes_peak": 12344981.084115325, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:04:11Z", "walltime": 974, "usertime": 3367.421288, "systemtime": 151.179034, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2624115.0626216503, "out_bytes_dev": 0 } }, { "index": 5, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 859.554506688, "core_hours": 0.9550605629866666, "maxrss": 13536316, "maxvmem": 15746852, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 3373856, "total_blocks": 3373856, "in_blocks_rate": 0, "out_blocks_rate": 3925.1216458628123, "total_blocks_rate": 3925.1216458628123, "in_bytes": 1653157888, "out_bytes": 0, "in_bytes_rate": 1923272.8990856903, "out_bytes_rate": 0, "in_bytes_peak": 6405422.826405305, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:02:16Z", "walltime": 859, "usertime": 2967.677192, "systemtime": 109.851447, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2559581.8196865963, "out_bytes_dev": 0 } }, { "index": 6, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 845.281209638, "core_hours": 0.9392013440422222, "maxrss": 13528740, "maxvmem": 15645616, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 3208640, "total_blocks": 3208640, "in_blocks_rate": 0, "out_blocks_rate": 3795.943839061715, "total_blocks_rate": 3795.943839061715, "in_bytes": 1555869696, "out_bytes": 0, "in_bytes_rate": 1840653.3568471451, "out_bytes_rate": 0, "in_bytes_peak": 6301641.715608898, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:02:02Z", "walltime": 845, "usertime": 2922.772137, "systemtime": 109.472154, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2544893.827604574, "out_bytes_dev": 0 } }, { "index": 7, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 885.163059961, "core_hours": 0.9835145110677779, "maxrss": 13397400, "maxvmem": 15377932, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 3211840, "total_blocks": 3211840, "in_blocks_rate": 0, "out_blocks_rate": 3628.5291888948827, "total_blocks_rate": 3628.5291888948827, "in_bytes": 1560719360, "out_bytes": 0, "in_bytes_rate": 1763199.8335637331, "out_bytes_rate": 0, "in_bytes_peak": 6286638.405278595, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:02:42Z", "walltime": 885, "usertime": 2941.4331650000004, "systemtime": 225.975407, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2436606.4709110013, "out_bytes_dev": 0 } }, { "index": 8, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 860.559468648, "core_hours": 0.9561771873866667, "maxrss": 13640872, "maxvmem": 15764120, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 3251392, "total_blocks": 3251392, "in_blocks_rate": 0, "out_blocks_rate": 3778.2304633846716, "total_blocks_rate": 3778.2304633846716, "in_bytes": 1574723584, "out_bytes": 0, "in_bytes_rate": 1829883.5134241246, "out_bytes_rate": 0, "in_bytes_peak": 6247796.815573702, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:02:17Z", "walltime": 860, "usertime": 2953.5006200000003, "systemtime": 121.754401, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2536961.825178652, "out_bytes_dev": 0 } }, { "index": 9, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 703.157062257, "core_hours": 0.78128562473, "maxrss": 13513656, "maxvmem": 15637388, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 2530736, "total_blocks": 2530736, "in_blocks_rate": 0, "out_blocks_rate": 3599.10485984002, "total_blocks_rate": 3599.10485984002, "in_bytes": 1270747136, "out_bytes": 0, "in_bytes_rate": 1807202.407839216, "out_bytes_rate": 0, "in_bytes_peak": 7011522.220388077, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T15:59:40Z", "walltime": 703, "usertime": 2341.930161, "systemtime": 111.527112, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2516764.2852643155, "out_bytes_dev": 0 } }, { "index": 10, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 860.18838133, "core_hours": 0.9557648681444444, "maxrss": 13527168, "maxvmem": 15544140, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 3267232, "total_blocks": 3267232, "in_blocks_rate": 0, "out_blocks_rate": 3798.2749719872922, "total_blocks_rate": 3798.2749719872922, "in_bytes": 1578848256, "out_bytes": 0, "in_bytes_rate": 1835468.00941304, "out_bytes_rate": 0, "in_bytes_peak": 6259712.6428570505, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:02:17Z", "walltime": 860, "usertime": 2976.067291, "systemtime": 126.71702, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2502697.7293310035, "out_bytes_dev": 0 } }, { "index": 11, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 964.877858912, "core_hours": 1.072086509902222, "maxrss": 13664720, "maxvmem": 15768948, "maxrss_requested": 17825792, "maxvmem_requested": 20971520, "in_blocks": 0, "out_blocks": 3921376, "total_blocks": 3921376, "in_blocks_rate": 0, "out_blocks_rate": 4064.1164721322953, "total_blocks_rate": 4064.1164721322953, "in_bytes": 1900003328, "out_bytes": 0, "in_bytes_rate": 1969164.605085302, "out_bytes_rate": 0, "in_bytes_peak": 6292996.250859766, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:04:02Z", "walltime": 965, "usertime": 3403.225128, "systemtime": 129.834614, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2551631.6410014187, "out_bytes_dev": 0 } }, { "index": 12, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 989.022635834, "core_hours": 1.0989140398155555, "maxrss": 13655220, "maxvmem": 16022456, "maxrss_requested": 17825792, "maxvmem_requested": 20971520, "in_blocks": 0, "out_blocks": 4113808, "total_blocks": 4113808, "in_blocks_rate": 0, "out_blocks_rate": 4159.467994917026, "total_blocks_rate": 4159.467994917026, "in_bytes": 2021490688, "out_bytes": 0, "in_bytes_rate": 2043927.625878213, "out_bytes_rate": 0, "in_bytes_peak": 7795124.7280923035, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:04:26Z", "walltime": 989, "usertime": 3459.700215, "systemtime": 150.72656999999998, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2631489.3488910897, "out_bytes_dev": 0 } }, { "index": 13, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 859.229548875, "core_hours": 0.9546994987499999, "maxrss": 13488928, "maxvmem": 15459012, "maxrss_requested": 16777216, "maxvmem_requested": 19922944, "in_blocks": 0, "out_blocks": 3279224, "total_blocks": 3279224, "in_blocks_rate": 0, "out_blocks_rate": 3816.470236962322, "total_blocks_rate": 3816.470236962322, "in_bytes": 1592258560, "out_bytes": 0, "in_bytes_rate": 1853123.6060081548, "out_bytes_rate": 0, "in_bytes_peak": 6469291.679772363, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:02:16Z", "walltime": 859, "usertime": 2939.571865, "systemtime": 142.52164599999998, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2534942.3244733997, "out_bytes_dev": 0 } }, { "index": 14, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 1287.384228528, "core_hours": 1.4304269205866667, "maxrss": 13707920, "maxvmem": 15897248, "maxrss_requested": 17825792, "maxvmem_requested": 20971520, "in_blocks": 0, "out_blocks": 5688352, "total_blocks": 5688352, "in_blocks_rate": 0, "out_blocks_rate": 4418.534788564315, "total_blocks_rate": 4418.534788564315, "in_bytes": 2912362496, "out_bytes": 0, "in_bytes_rate": 2262232.5421292493, "out_bytes_rate": 0, "in_bytes_peak": 27652274.283883225, "out_bytes_peak": 0, "start": "2021-12-15T15:47:57Z", "end": "2021-12-15T16:09:24Z", "walltime": 1287, "usertime": 4519.009682, "systemtime": 271.979856, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 3051274.018534209, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.175737432, "core_hours": 0.000048815953333333336, "maxrss": 21208, "maxvmem": 1132988, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 455.224587554005, "total_blocks_rate": 455.224587554005, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:47:56Z", "end": "2021-12-15T15:47:57Z", "walltime": 1, "usertime": 0.035545, "systemtime": 0.12345, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 2.120262269, "core_hours": 0.0005889617413888889, "maxrss": 412692, "maxvmem": 1730596, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 188264, "total_blocks": 188264, "in_blocks_rate": 0, "out_blocks_rate": 88792.78886983769, "total_blocks_rate": 88792.78886983769, "in_bytes": 12288, "out_bytes": 0, "in_bytes_rate": 5795.509442233064, "out_bytes_rate": 0, "in_bytes_peak": 24455.50523126403, "out_bytes_peak": 0, "start": "2021-12-15T16:09:25Z", "end": "2021-12-15T16:09:27Z", "walltime": 2, "usertime": 0.775711, "systemtime": 0.214276, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1943.9899551534725, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 17, "num_threads": 62, "duration": 13391.501831967, "core_hours": 14.877533146879166, "maxrss": 13714552, "maxvmem": 16022456, "maxrss_requested": 17825792, "maxvmem_requested": 20971520, "in_blocks": 0, "out_blocks": 53350112, "total_blocks": 53350112, "in_blocks_rate": 0, "out_blocks_rate": 3983.8781840470924, "total_blocks_rate": 3983.8781840470924, "in_bytes": 26179932160, "out_bytes": 0, "in_bytes_rate": 1954966.1037648218, "out_bytes_rate": 0, "in_bytes_peak": 27652274.283883225, "out_bytes_peak": 0, "start": "2021-12-15T15:47:56Z", "end": "2021-12-15T16:09:27Z", "walltime": 1291, "usertime": 46100.15798999999, "systemtime": 2192.453085, "total_files": 107, "total_bytes": 27311114145, "output_files": 0, "output_bytes": 0, "vdr_files": 107, "vdr_bytes": 27311114145, "in_bytes_dev": 149287.74246451503, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION", "type": "stage", "forks": [ { "stages": [ { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 7.936641484, "core_hours": 0.008818490537777777, "maxrss": 626076, "maxvmem": 2447568, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 127264, "total_blocks": 127264, "in_blocks_rate": 0, "out_blocks_rate": 16034.994179409503, "total_blocks_rate": 16034.994179409503, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1032.1746316139886, "out_bytes_rate": 0, "in_bytes_peak": 16285.751254687715, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:48Z", "walltime": 8, "usertime": 7.609622, "systemtime": 0.271169, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4691.559049893151, "out_bytes_dev": 0 } }, { "index": 1, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 8.078292252, "core_hours": 0.008975880280000001, "maxrss": 619044, "maxvmem": 2440508, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 125544, "total_blocks": 125544, "in_blocks_rate": 0, "out_blocks_rate": 15540.908410303944, "total_blocks_rate": 15540.908410303944, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1014.0757160613801, "out_bytes_rate": 0, "in_bytes_peak": 16320.428796316019, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:49Z", "walltime": 9, "usertime": 7.7228460000000005, "systemtime": 0.29591, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4697.489508852277, "out_bytes_dev": 0 } }, { "index": 2, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 8.227178337, "core_hours": 0.009141309263333333, "maxrss": 616124, "maxvmem": 2305744, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 123744, "total_blocks": 123744, "in_blocks_rate": 0, "out_blocks_rate": 15040.87974409008, "total_blocks_rate": 15040.87974409008, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 995.7241309767418, "out_bytes_rate": 0, "in_bytes_peak": 16284.276782548457, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:49Z", "walltime": 9, "usertime": 7.705501, "systemtime": 0.344436, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4690.870187637288, "out_bytes_dev": 0 } }, { "index": 3, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 7.008590851, "core_hours": 0.007787323167777778, "maxrss": 552748, "maxvmem": 2366524, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 98424, "total_blocks": 98424, "in_blocks_rate": 0, "out_blocks_rate": 14043.336541175986, "total_blocks_rate": 14043.336541175986, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1168.8512247552799, "out_bytes_rate": 0, "in_bytes_peak": 16285.768122696705, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:47Z", "walltime": 7, "usertime": 6.628509, "systemtime": 0.311803, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4690.556837359912, "out_bytes_dev": 0 } }, { "index": 4, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 7.978641588, "core_hours": 0.00886515732, "maxrss": 611652, "maxvmem": 2441016, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 123736, "total_blocks": 123736, "in_blocks_rate": 0, "out_blocks_rate": 15508.404361226208, "total_blocks_rate": 15508.404361226208, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1026.7411951830113, "out_bytes_rate": 0, "in_bytes_peak": 16287.352543889227, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:48Z", "walltime": 8, "usertime": 7.651998000000001, "systemtime": 0.259834, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4690.275126619228, "out_bytes_dev": 0 } }, { "index": 5, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 7.966006257, "core_hours": 0.008851118063333333, "maxrss": 630108, "maxvmem": 2299676, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 118568, "total_blocks": 118568, "in_blocks_rate": 0, "out_blocks_rate": 14884.246405883785, "total_blocks_rate": 14884.246405883785, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1028.3697671968825, "out_bytes_rate": 0, "in_bytes_peak": 16285.246525632507, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:48Z", "walltime": 8, "usertime": 7.6105920000000005, "systemtime": 0.303909, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4690.032336536576, "out_bytes_dev": 0 } }, { "index": 6, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 6.991202921, "core_hours": 0.007768003245555556, "maxrss": 553240, "maxvmem": 2433620, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 97792, "total_blocks": 97792, "in_blocks_rate": 0, "out_blocks_rate": 13987.864621445166, "total_blocks_rate": 13987.864621445166, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1171.75829289593, "out_bytes_rate": 0, "in_bytes_peak": 16281.285181609954, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:47Z", "walltime": 7, "usertime": 6.687578, "systemtime": 0.24316100000000002, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4689.242068764095, "out_bytes_dev": 0 } }, { "index": 7, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 7.993634979, "core_hours": 0.008881816643333333, "maxrss": 624404, "maxvmem": 2436336, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 120544, "total_blocks": 120544, "in_blocks_rate": 0, "out_blocks_rate": 15079.998063043904, "total_blocks_rate": 15079.998063043904, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1024.8153714200264, "out_bytes_rate": 0, "in_bytes_peak": 16284.509657968563, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:48Z", "walltime": 8, "usertime": 7.5890509999999995, "systemtime": 0.345131, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4690.038237771277, "out_bytes_dev": 0 } }, { "index": 8, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 8.205218319, "core_hours": 0.009116909243333334, "maxrss": 634692, "maxvmem": 2432632, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 122472, "total_blocks": 122472, "in_blocks_rate": 0, "out_blocks_rate": 14926.111072072743, "total_blocks_rate": 14926.111072072743, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 998.3890350645038, "out_bytes_rate": 0, "in_bytes_peak": 16293.953713368683, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:49Z", "walltime": 9, "usertime": 7.717126, "systemtime": 0.361405, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4692.508773891139, "out_bytes_dev": 0 } }, { "index": 9, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 7.071667627, "core_hours": 0.007857408474444445, "maxrss": 554616, "maxvmem": 2434648, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 98640, "total_blocks": 98640, "in_blocks_rate": 0, "out_blocks_rate": 13948.619364319002, "total_blocks_rate": 13948.619364319002, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1158.4254849199235, "out_bytes_rate": 0, "in_bytes_peak": 16291.460367084028, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:48Z", "walltime": 8, "usertime": 6.644526999999999, "systemtime": 0.375973, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4690.527418572116, "out_bytes_dev": 0 } }, { "index": 10, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 7.989483719, "core_hours": 0.008877204132222222, "maxrss": 618412, "maxvmem": 2371464, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 124264, "total_blocks": 124264, "in_blocks_rate": 0, "out_blocks_rate": 15553.445550490895, "total_blocks_rate": 15553.445550490895, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1025.3478557717553, "out_bytes_rate": 0, "in_bytes_peak": 16273.715083368113, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:48Z", "walltime": 8, "usertime": 7.566412, "systemtime": 0.376054, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4687.588545046423, "out_bytes_dev": 0 } }, { "index": 11, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 8.194216856, "core_hours": 0.009104685395555557, "maxrss": 623516, "maxvmem": 2367340, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 124792, "total_blocks": 124792, "in_blocks_rate": 0, "out_blocks_rate": 15229.2772076961, "total_blocks_rate": 15229.2772076961, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 999.72946090652, "out_bytes_rate": 0, "in_bytes_peak": 16333.352820905413, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:49Z", "walltime": 9, "usertime": 7.658793, "systemtime": 0.419934, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4697.6116254325625, "out_bytes_dev": 0 } }, { "index": 12, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 7.919370746, "core_hours": 0.00879930082888889, "maxrss": 604204, "maxvmem": 2435168, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 120392, "total_blocks": 120392, "in_blocks_rate": 0, "out_blocks_rate": 15202.21793641987, "total_blocks_rate": 15202.21793641987, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1034.4256207650972, "out_bytes_rate": 0, "in_bytes_peak": 16337.398974441718, "out_bytes_peak": 0, "start": "2021-12-15T15:47:41Z", "end": "2021-12-15T15:47:48Z", "walltime": 7, "usertime": 7.536164, "systemtime": 0.343794, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4698.1664786369865, "out_bytes_dev": 0 } }, { "index": 13, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 7.336692449, "core_hours": 0.008151880498888889, "maxrss": 564856, "maxvmem": 2364668, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 104224, "total_blocks": 104224, "in_blocks_rate": 0, "out_blocks_rate": 14205.856484307973, "total_blocks_rate": 14205.856484307973, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1116.5794473389135, "out_bytes_rate": 0, "in_bytes_peak": 16290.124378957402, "out_bytes_peak": 0, "start": "2021-12-15T15:47:41Z", "end": "2021-12-15T15:47:48Z", "walltime": 7, "usertime": 6.982137000000001, "systemtime": 0.319659, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4691.2066932702965, "out_bytes_dev": 0 } }, { "index": 14, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 7.8834352580000004, "core_hours": 0.008759372508888889, "maxrss": 612296, "maxvmem": 2439032, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 119832, "total_blocks": 119832, "in_blocks_rate": 0, "out_blocks_rate": 15200.480003738998, "total_blocks_rate": 15200.480003738998, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1039.140898846968, "out_bytes_rate": 0, "in_bytes_peak": 16328.84947418942, "out_bytes_peak": 0, "start": "2021-12-15T15:47:41Z", "end": "2021-12-15T15:47:48Z", "walltime": 7, "usertime": 7.44643, "systemtime": 0.407683, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4699.03856505057, "out_bytes_dev": 0 } }, { "index": 15, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 8.17984906, "core_hours": 0.009088721177777778, "maxrss": 616620, "maxvmem": 2437648, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 124744, "total_blocks": 124744, "in_blocks_rate": 0, "out_blocks_rate": 15250.159151469721, "total_blocks_rate": 15250.159151469721, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1001.4854723981911, "out_bytes_rate": 0, "in_bytes_peak": 16289.911167248732, "out_bytes_peak": 0, "start": "2021-12-15T15:47:41Z", "end": "2021-12-15T15:47:49Z", "walltime": 8, "usertime": 7.716844, "systemtime": 0.387986, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4689.014537814576, "out_bytes_dev": 0 } }, { "index": 16, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 7.525919929, "core_hours": 0.008362133254444444, "maxrss": 637384, "maxvmem": 2385056, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 122136, "total_blocks": 122136, "in_blocks_rate": 0, "out_blocks_rate": 16228.713719018895, "total_blocks_rate": 16228.713719018895, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1088.5048043672855, "out_bytes_rate": 0, "in_bytes_peak": 16289.023590152896, "out_bytes_peak": 0, "start": "2021-12-15T15:47:47Z", "end": "2021-12-15T15:47:55Z", "walltime": 8, "usertime": 7.254893, "systemtime": 0.25288, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4692.061878952259, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 4, "duration": 0.031065977, "core_hours": 0.00003451775222222222, "maxrss": 19532, "maxvmem": 1131600, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 2575.164463683212, "total_blocks_rate": 2575.164463683212, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:40Z", "walltime": 0, "usertime": 0.0039, "systemtime": 0.00874, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 4, "duration": 0.809284465, "core_hours": 0.0008992049611111111, "maxrss": 331196, "maxvmem": 1662588, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 154192, "total_blocks": 154192, "in_blocks_rate": 0, "out_blocks_rate": 190528.80250209672, "total_blocks_rate": 190528.80250209672, "in_bytes": 946176, "out_bytes": 0, "in_bytes_rate": 1169151.3193695124, "out_bytes_rate": 0, "in_bytes_peak": 1882592.2352127344, "out_bytes_peak": 0, "start": "2021-12-15T15:47:55Z", "end": "2021-12-15T15:47:56Z", "walltime": 1, "usertime": 0.628334, "systemtime": 0.159592, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 160160.87023981576, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 19, "num_threads": 76, "duration": 133.32639307399998, "core_hours": 0.14814043674888888, "maxrss": 637384, "maxvmem": 2447568, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 2151384, "total_blocks": 2151384, "in_blocks_rate": 0, "out_blocks_rate": 16136.219921631871, "total_blocks_rate": 16136.219921631871, "in_bytes": 1085440, "out_bytes": 0, "in_bytes_rate": 8141.22376653173, "out_bytes_rate": 0, "in_bytes_peak": 1882592.2352127344, "out_bytes_peak": 0, "start": "2021-12-15T15:47:40Z", "end": "2021-12-15T15:47:56Z", "walltime": 16, "usertime": 126.36125699999998, "systemtime": 5.789053000000001, "total_files": 88, "total_bytes": 1100681434, "output_files": 0, "output_bytes": 0, "vdr_files": 88, "vdr_bytes": 1100681434, "in_bytes_dev": 90729.9597024464, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "COLLATE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS", "type": "stage", "forks": [ { "stages": [ { "name": "COLLATE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 4, "duration": 21.412590674, "core_hours": 0.023791767415555557, "maxrss": 22168, "maxvmem": 1696492, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 295864, "total_blocks": 295864, "in_blocks_rate": 0, "out_blocks_rate": 13817.291167819762, "total_blocks_rate": 13817.291167819762, "in_bytes": 147140608, "out_bytes": 0, "in_bytes_rate": 6871686.394242049, "out_bytes_rate": 0, "in_bytes_peak": 7324211.4987204475, "out_bytes_peak": 0, "start": "2021-12-15T16:09:29Z", "end": "2021-12-15T16:09:51Z", "walltime": 22, "usertime": 20.971989, "systemtime": 0.21840500000000002, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 184705.5458120903, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.012129895, "core_hours": 0.0000033694152777777775, "maxrss": 22168, "maxvmem": 1199172, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 5935.748001116251, "total_blocks_rate": 5935.748001116251, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:09:29Z", "end": "2021-12-15T16:09:29Z", "walltime": 0, "usertime": 0.007631, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 4, "duration": 0.0198339, "core_hours": 0.000022037666666666667, "maxrss": 22168, "maxvmem": 1133632, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 3630.148382315127, "total_blocks_rate": 3630.148382315127, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:09:51Z", "end": "2021-12-15T16:09:51Z", "walltime": 0, "usertime": 0.003269, "systemtime": 0.0070869999999999995, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 3, "num_threads": 9, "duration": 21.444554469, "core_hours": 0.0238171744975, "maxrss": 22168, "maxvmem": 1696492, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 296008, "total_blocks": 296008, "in_blocks_rate": 0, "out_blocks_rate": 13803.411044417162, "total_blocks_rate": 13803.411044417162, "in_bytes": 147140608, "out_bytes": 0, "in_bytes_rate": 6861443.925669091, "out_bytes_rate": 0, "in_bytes_peak": 7324211.4987204475, "out_bytes_peak": 0, "start": "2021-12-15T16:09:29Z", "end": "2021-12-15T16:09:51Z", "walltime": 22, "usertime": 20.982889, "systemtime": 0.22549200000000003, "total_files": 2, "total_bytes": 151440798, "output_files": 0, "output_bytes": 0, "vdr_files": 2, "vdr_bytes": 151440798, "in_bytes_dev": 265100.2145864489, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MAKE_READ_SHARDS_STRUCT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_READ_SHARDS_STRUCT", "type": "pipeline", "forks": [ { "stages": [], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD", "type": "stage", "forks": [ { "stages": [ { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 248.564971926, "core_hours": 0.13809165107, "maxrss": 1256964, "maxvmem": 3165668, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 10739728, "total_blocks": 10739728, "in_blocks_rate": 0, "out_blocks_rate": 43206.924599164005, "total_blocks_rate": 43206.924599164005, "in_bytes": 5396180992, "out_bytes": 0, "in_bytes_rate": 21709338.006026413, "out_bytes_rate": 0, "in_bytes_peak": 32808518.781958297, "out_bytes_peak": 0, "start": "2021-12-15T15:42:56Z", "end": "2021-12-15T15:47:04Z", "walltime": 248, "usertime": 312.017406, "systemtime": 23.473409999999998, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 3198647.4852051726, "out_bytes_dev": 0 } }, { "index": 1, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 233.654658022, "core_hours": 0.12980814334555557, "maxrss": 1248920, "maxvmem": 3104584, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 10191344, "total_blocks": 10191344, "in_blocks_rate": 0, "out_blocks_rate": 43617.12317774732, "total_blocks_rate": 43617.12317774732, "in_bytes": 5059883008, "out_bytes": 0, "in_bytes_rate": 21655391.126521353, "out_bytes_rate": 0, "in_bytes_peak": 32449812.407717105, "out_bytes_peak": 0, "start": "2021-12-15T15:42:56Z", "end": "2021-12-15T15:46:49Z", "walltime": 233, "usertime": 295.24197699999996, "systemtime": 22.068599, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 3308866.435399922, "out_bytes_dev": 0 } }, { "index": 2, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 279.805911347, "core_hours": 0.1554477285261111, "maxrss": 1242584, "maxvmem": 3149460, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 12004280, "total_blocks": 12004280, "in_blocks_rate": 0, "out_blocks_rate": 42902.16722802882, "total_blocks_rate": 42902.16722802882, "in_bytes": 5960970240, "out_bytes": 0, "in_bytes_rate": 21303946.765468907, "out_bytes_rate": 0, "in_bytes_peak": 32379546.923156492, "out_bytes_peak": 0, "start": "2021-12-15T15:42:56Z", "end": "2021-12-15T15:47:35Z", "walltime": 279, "usertime": 355.390823, "systemtime": 28.412953, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 2937831.311406139, "out_bytes_dev": 0 } }, { "index": 3, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 277.294231218, "core_hours": 0.15405235067666667, "maxrss": 1242928, "maxvmem": 3282928, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 11982304, "total_blocks": 11982304, "in_blocks_rate": 0, "out_blocks_rate": 43211.51560697233, "total_blocks_rate": 43211.51560697233, "in_bytes": 6002417664, "out_bytes": 0, "in_bytes_rate": 21646384.91624836, "out_bytes_rate": 0, "in_bytes_peak": 32623030.560899355, "out_bytes_peak": 0, "start": "2021-12-15T15:42:56Z", "end": "2021-12-15T15:47:33Z", "walltime": 277, "usertime": 349.13873, "systemtime": 26.952700999999998, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 3096241.994052306, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 4, "duration": 3.632695548, "core_hours": 0.004036328386666667, "maxrss": 352184, "maxvmem": 1531188, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 8976, "total_blocks": 8976, "in_blocks_rate": 0, "out_blocks_rate": 2470.8924492562514, "total_blocks_rate": 2470.8924492562514, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 2255.0747486973273, "out_bytes_rate": 0, "in_bytes_peak": 16281.30757367335, "out_bytes_peak": 0, "start": "2021-12-15T15:42:52Z", "end": "2021-12-15T15:42:56Z", "walltime": 4, "usertime": 3.298968, "systemtime": 0.191958, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1290.480923110591, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 4, "duration": 4.248747406, "core_hours": 0.004720830451111111, "maxrss": 666308, "maxvmem": 1739976, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 270088, "total_blocks": 270088, "in_blocks_rate": 0, "out_blocks_rate": 63568.85316801533, "total_blocks_rate": 63568.85316801533, "in_bytes": 274432, "out_bytes": 0, "in_bytes_rate": 64591.27215057605, "out_bytes_rate": 0, "in_bytes_peak": 545785.279815091, "out_bytes_peak": 0, "start": "2021-12-15T15:47:35Z", "end": "2021-12-15T15:47:40Z", "walltime": 5, "usertime": 1.684765, "systemtime": 0.560978, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 46553.27521890568, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 6, "num_threads": 16, "duration": 1047.2012154669999, "core_hours": 0.5861570324561112, "maxrss": 1256964, "maxvmem": 3282928, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 45196720, "total_blocks": 45196720, "in_blocks_rate": 0, "out_blocks_rate": 43159.537376820655, "total_blocks_rate": 43159.537376820655, "in_bytes": 22419734528, "out_bytes": 0, "in_bytes_rate": 21409194.52428434, "out_bytes_rate": 0, "in_bytes_peak": 32808518.781958297, "out_bytes_peak": 0, "start": "2021-12-15T15:42:52Z", "end": "2021-12-15T15:47:40Z", "walltime": 288, "usertime": 1316.772669, "systemtime": 101.66059899999999, "total_files": 31, "total_bytes": 23140211837, "output_files": 0, "output_bytes": 0, "vdr_files": 31, "vdr_bytes": 23140211837, "in_bytes_dev": 1868390.9098628825, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS", "type": "stage", "forks": [ { "stages": [ { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.021807391, "core_hours": 0.000006057608611111111, "maxrss": 22168, "maxvmem": 1200660, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 88, "total_blocks": 88, "in_blocks_rate": 0, "out_blocks_rate": 4035.3291230482364, "total_blocks_rate": 4035.3291230482364, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:09:51Z", "end": "2021-12-15T16:09:51Z", "walltime": 0, "usertime": 0.010782, "systemtime": 0.000192, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.021807391, "core_hours": 0.000006057608611111111, "maxrss": 22168, "maxvmem": 1200660, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 88, "total_blocks": 88, "in_blocks_rate": 0, "out_blocks_rate": 4035.3291230482364, "total_blocks_rate": 4035.3291230482364, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:09:51Z", "end": "2021-12-15T16:09:51Z", "walltime": 0, "usertime": 0.010782, "systemtime": 0.000192, "total_files": 1, "total_bytes": 5006, "output_files": 0, "output_bytes": 0, "vdr_files": 1, "vdr_bytes": 5006, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SET_ALIGNER_SUBSAMPLE_RATE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE", "type": "stage", "forks": [ { "stages": [ { "name": "SET_ALIGNER_SUBSAMPLE_RATE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.035339519, "core_hours": 0.000009816533055555556, "maxrss": 21208, "maxvmem": 1132988, "maxrss_requested": 8388608, "maxvmem_requested": 11534336, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 2037.3791731573936, "total_blocks_rate": 2037.3791731573936, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:47:56Z", "end": "2021-12-15T15:47:56Z", "walltime": 0, "usertime": 0.00828, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.035339519, "core_hours": 0.000009816533055555556, "maxrss": 21208, "maxvmem": 1132988, "maxrss_requested": 8388608, "maxvmem_requested": 11534336, "in_blocks": 0, "out_blocks": 72, "total_blocks": 72, "in_blocks_rate": 0, "out_blocks_rate": 2037.3791731573936, "total_blocks_rate": 2037.3791731573936, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T15:47:56Z", "end": "2021-12-15T15:47:56Z", "walltime": 0, "usertime": 0.00828, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_BARCODE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_BARCODE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 4.131536745, "core_hours": 0.0011476490958333334, "maxrss": 780936, "maxvmem": 1604448, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 269792, "total_blocks": 269792, "in_blocks_rate": 0, "out_blocks_rate": 65300.64154131104, "total_blocks_rate": 65300.64154131104, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1982.7973235174506, "out_bytes_rate": 0, "in_bytes_peak": 16287.344707315799, "out_bytes_peak": 0, "start": "2021-12-15T15:47:56Z", "end": "2021-12-15T15:48:00Z", "walltime": 4, "usertime": 2.866742, "systemtime": 0.35597599999999996, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1302.526319924707, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 4.131536745, "core_hours": 0.0011476490958333334, "maxrss": 780936, "maxvmem": 1604448, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 269792, "total_blocks": 269792, "in_blocks_rate": 0, "out_blocks_rate": 65300.64154131104, "total_blocks_rate": 65300.64154131104, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 1982.7973235174506, "out_bytes_rate": 0, "in_bytes_peak": 16287.344707315799, "out_bytes_peak": 0, "start": "2021-12-15T15:47:56Z", "end": "2021-12-15T15:48:00Z", "walltime": 4, "usertime": 2.866742, "systemtime": 0.35597599999999996, "total_files": 1, "total_bytes": 138093089, "output_files": 0, "output_bytes": 0, "vdr_files": 1, "vdr_bytes": 138093089, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_BARCODE_SUMMARY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_BARCODE_SUMMARY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 100.346043097, "core_hours": 0.02787390086027778, "maxrss": 482040, "maxvmem": 2310120, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 24432, "total_blocks": 24432, "in_blocks_rate": 0, "out_blocks_rate": 243.47746304637727, "total_blocks_rate": 243.47746304637727, "in_bytes": 8720384, "out_bytes": 0, "in_bytes_rate": 86903.11775991404, "out_bytes_rate": 0, "in_bytes_peak": 1742158.9218204662, "out_bytes_peak": 0, "start": "2021-12-15T16:09:29Z", "end": "2021-12-15T16:11:10Z", "walltime": 101, "usertime": 32.098325, "systemtime": 67.944357, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 387801.24979562487, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 100.346043097, "core_hours": 0.02787390086027778, "maxrss": 482040, "maxvmem": 2310120, "maxrss_requested": 4194304, "maxvmem_requested": 7340032, "in_blocks": 0, "out_blocks": 24432, "total_blocks": 24432, "in_blocks_rate": 0, "out_blocks_rate": 243.47746304637727, "total_blocks_rate": 243.47746304637727, "in_bytes": 8720384, "out_bytes": 0, "in_bytes_rate": 86903.11775991404, "out_bytes_rate": 0, "in_bytes_peak": 1742158.9218204662, "out_bytes_peak": 0, "start": "2021-12-15T16:09:29Z", "end": "2021-12-15T16:11:10Z", "walltime": 101, "usertime": 32.098325, "systemtime": 67.944357, "total_files": 1, "total_bytes": 12232239, "output_files": 0, "output_bytes": 0, "vdr_files": 1, "vdr_bytes": 12232239, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_H5_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_H5_MATRIX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 30.941011338, "core_hours": 0.008594725371666667, "maxrss": 471772, "maxvmem": 1970292, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 153136, "total_blocks": 153136, "in_blocks_rate": 0, "out_blocks_rate": 4949.288771693349, "total_blocks_rate": 4949.288771693349, "in_bytes": 74833920, "out_bytes": 0, "in_bytes_rate": 2418599.676090523, "out_bytes_rate": 0, "in_bytes_peak": 2983853.045232723, "out_bytes_peak": 0, "start": "2021-12-15T16:09:29Z", "end": "2021-12-15T16:10:00Z", "walltime": 31, "usertime": 30.043781, "systemtime": 0.886502, "total_files": 1, "total_bytes": 78367483, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 451683.1140614664, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 30.941011338, "core_hours": 0.008594725371666667, "maxrss": 471772, "maxvmem": 1970292, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 153136, "total_blocks": 153136, "in_blocks_rate": 0, "out_blocks_rate": 4949.288771693349, "total_blocks_rate": 4949.288771693349, "in_bytes": 74833920, "out_bytes": 0, "in_bytes_rate": 2418599.676090523, "out_bytes_rate": 0, "in_bytes_peak": 2983853.045232723, "out_bytes_peak": 0, "start": "2021-12-15T16:09:29Z", "end": "2021-12-15T16:10:00Z", "walltime": 31, "usertime": 30.043781, "systemtime": 0.886502, "total_files": 1, "total_bytes": 78367483, "output_files": 1, "output_bytes": 78367483, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_MATRIX_MARKET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_MATRIX_MARKET", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 41.61218338, "core_hours": 0.011558939827777778, "maxrss": 521616, "maxvmem": 2294368, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 349600, "total_blocks": 349600, "in_blocks_rate": 0, "out_blocks_rate": 8401.385642456526, "total_blocks_rate": 8401.385642456526, "in_bytes": 176881664, "out_bytes": 0, "in_bytes_rate": 4250718.170318705, "out_bytes_rate": 0, "in_bytes_peak": 5437980.475657737, "out_bytes_peak": 0, "start": "2021-12-15T16:09:29Z", "end": "2021-12-15T16:10:11Z", "walltime": 42, "usertime": 40.250820999999995, "systemtime": 1.363059, "total_files": 4, "total_bytes": 178945918, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 799545.1456696113, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 41.61218338, "core_hours": 0.011558939827777778, "maxrss": 521616, "maxvmem": 2294368, "maxrss_requested": 2097152, "maxvmem_requested": 5242880, "in_blocks": 0, "out_blocks": 349600, "total_blocks": 349600, "in_blocks_rate": 0, "out_blocks_rate": 8401.385642456526, "total_blocks_rate": 8401.385642456526, "in_bytes": 176881664, "out_bytes": 0, "in_bytes_rate": 4250718.170318705, "out_bytes_rate": 0, "in_bytes_peak": 5437980.475657737, "out_bytes_peak": 0, "start": "2021-12-15T16:09:29Z", "end": "2021-12-15T16:10:11Z", "walltime": 42, "usertime": 40.250820999999995, "systemtime": 1.363059, "total_files": 4, "total_bytes": 178945918, "output_files": 4, "output_bytes": 178945918, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_SLFE_PARTIAL_FIRST_PASS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS", "type": "pipeline", "forks": [ { "stages": [ { "name": "SUBSAMPLE_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES", "forki": 0 }, { "name": "INITIAL_ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT", "forki": 0 }, { "name": "SET_TARGETED_UMI_FILTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "INITIAL_ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT", "type": "stage", "forks": [ { "stages": [ { "name": "INITIAL_ALIGN_AND_COUNT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SET_TARGETED_UMI_FILTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER", "type": "stage", "forks": [ { "stages": [ { "name": "SET_TARGETED_UMI_FILTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUBSAMPLE_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES", "type": "stage", "forks": [ { "stages": [ { "name": "SUBSAMPLE_BARCODES", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "VDJ_B_GEM_WELL_PROCESSOR", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR", "type": "pipeline", "forks": [ { "stages": [ { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "type": "stage", "forks": [ { "stages": [ { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SC_VDJ_CONTIG_ASSEMBLER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER", "type": "pipeline", "forks": [ { "stages": [ { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "type": "stage", "forks": [ { "stages": [ { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "type": "stage", "forks": [ { "stages": [ { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "type": "stage", "forks": [ { "stages": [ { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "type": "stage", "forks": [ { "stages": [ { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "type": "stage", "forks": [ { "stages": [ { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "type": "stage", "forks": [ { "stages": [ { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "VDJ_T_GEM_WELL_PROCESSOR", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR", "type": "pipeline", "forks": [ { "stages": [ { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "type": "stage", "forks": [ { "stages": [ { "name": "MULTI_SETUP_CHUNKS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SC_VDJ_CONTIG_ASSEMBLER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER", "type": "pipeline", "forks": [ { "stages": [ { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "type": "stage", "forks": [ { "stages": [ { "name": "ASSEMBLE_VDJ", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "type": "stage", "forks": [ { "stages": [ { "name": "BARCODE_CORRECTION", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "type": "stage", "forks": [ { "stages": [ { "name": "HANDLE_GEX_CELLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "type": "stage", "forks": [ { "stages": [ { "name": "MAKE_SHARD", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "type": "stage", "forks": [ { "stages": [ { "name": "MERGE_METRICS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "type": "stage", "forks": [ { "stages": [ { "name": "RUST_BRIDGE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MULTI_REPORTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER", "type": "pipeline", "forks": [ { "stages": [ { "name": "CHOOSE_CLOUPE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE", "forki": 0 }, { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS", "forki": 0 }, { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS", "forki": 0 }, { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS", "forki": 0 }, { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO", "forki": 0 }, { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS", "forki": 0 }, { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO", "forki": 0 }, { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS", "forki": 0 }, { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS", "forki": 0 }, { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS", "forki": 0 }, { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS", "forki": 0 }, { "name": "GENERATE_LIBRARY_PLOTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS", "forki": 0 }, { "name": "SUMMARIZE_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS", "forki": 0 }, { "name": "CLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 5, "num_threads": 6, "duration": 50.765661646000005, "core_hours": 0.024178673902500003, "maxrss": 1941632, "maxvmem": 6095260, "maxrss_requested": 8388608, "maxvmem_requested": 11534336, "in_blocks": 0, "out_blocks": 632424, "total_blocks": 632424, "in_blocks_rate": 0, "out_blocks_rate": 12457.712152163604, "total_blocks_rate": 12457.712152163604, "in_bytes": 299634688, "out_bytes": 0, "in_bytes_rate": 5902310.307495208, "out_bytes_rate": 0, "in_bytes_peak": 304485658.16210365, "out_bytes_peak": 0, "start": "2021-12-15T16:25:49Z", "end": "2021-12-15T16:26:40Z", "walltime": 51, "usertime": 68.42774700000001, "systemtime": 1.602767, "total_files": 8, "total_bytes": 476258186, "output_files": 4, "output_bytes": 157257137, "vdr_files": 4, "vdr_bytes": 319001049, "in_bytes_dev": 3533169.4680043804, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CHOOSE_CLOUPE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE", "type": "stage", "forks": [ { "stages": [ { "name": "CHOOSE_CLOUPE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.090851785, "core_hours": 0.000025236606944444445, "maxrss": 25496, "maxvmem": 1116760, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 880.5550710973922, "total_blocks_rate": 880.5550710973922, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:26:40Z", "end": "2021-12-15T16:26:40Z", "walltime": 0, "usertime": 0.052993000000000005, "systemtime": 0.009287, "total_files": 1, "total_bytes": 153129255, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.090851785, "core_hours": 0.000025236606944444445, "maxrss": 25496, "maxvmem": 1116760, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 80, "total_blocks": 80, "in_blocks_rate": 0, "out_blocks_rate": 880.5550710973922, "total_blocks_rate": 880.5550710973922, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:26:40Z", "end": "2021-12-15T16:26:40Z", "walltime": 0, "usertime": 0.052993000000000005, "systemtime": 0.009287, "total_files": 1, "total_bytes": 153129255, "output_files": 1, "output_bytes": 153129255, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS", "type": "stage", "forks": [ { "stages": [ { "name": "CLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 2, "duration": 36.277564403, "core_hours": 0.02015420244611111, "maxrss": 1941632, "maxvmem": 6095260, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 299200, "total_blocks": 299200, "in_blocks_rate": 0, "out_blocks_rate": 8247.521710009216, "total_blocks_rate": 8247.521710009216, "in_bytes": 145993728, "out_bytes": 0, "in_bytes_rate": 4024353.078894319, "out_bytes_rate": 0, "in_bytes_peak": 10479277.86824275, "out_bytes_peak": 0, "start": "2021-12-15T16:26:03Z", "end": "2021-12-15T16:26:40Z", "walltime": 37, "usertime": 56.61495, "systemtime": 0.823077, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 4299329.73946573, "out_bytes_dev": 0 } } ], "split_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.461011724, "core_hours": 0.00012805881222222222, "maxrss": 83008, "maxvmem": 1118188, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 88, "total_blocks": 88, "in_blocks_rate": 0, "out_blocks_rate": 190.88451642067133, "total_blocks_rate": 190.88451642067133, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:26:03Z", "end": "2021-12-15T16:26:03Z", "walltime": 0, "usertime": 0.357888, "systemtime": 0.073317, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 }, "join_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.512735134, "core_hours": 0.00014242642611111113, "maxrss": 85720, "maxvmem": 1748804, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 299160, "total_blocks": 299160, "in_blocks_rate": 0, "out_blocks_rate": 583459.1393536141, "total_blocks_rate": 583459.1393536141, "in_bytes": 153149440, "out_bytes": 0, "in_bytes_rate": 298691136.69905055, "out_bytes_rate": 0, "in_bytes_peak": 304485658.16210365, "out_bytes_peak": 0, "start": "2021-12-15T16:26:40Z", "end": "2021-12-15T16:26:40Z", "walltime": 0, "usertime": 0.358701, "systemtime": 0.15093, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 25996521.159968153, "out_bytes_dev": 0 }, "fork_stats": { "num_jobs": 3, "num_threads": 4, "duration": 37.251311261000005, "core_hours": 0.020424687684444446, "maxrss": 1941632, "maxvmem": 6095260, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 598448, "total_blocks": 598448, "in_blocks_rate": 0, "out_blocks_rate": 16065.152601125772, "total_blocks_rate": 16065.152601125772, "in_bytes": 299143168, "out_bytes": 0, "in_bytes_rate": 8030406.390370097, "out_bytes_rate": 0, "in_bytes_peak": 304485658.16210365, "out_bytes_peak": 0, "start": "2021-12-15T16:26:03Z", "end": "2021-12-15T16:26:40Z", "walltime": 37, "usertime": 57.33153900000001, "systemtime": 1.047324, "total_files": 3, "total_bytes": 306258588, "output_files": 0, "output_bytes": 0, "vdr_files": 3, "vdr_bytes": 306258588, "in_bytes_dev": 34340624.22082902, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "GENERATE_LIBRARY_PLOTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS", "type": "stage", "forks": [ { "stages": [ { "name": "GENERATE_LIBRARY_PLOTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUMMARIZE_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS", "type": "stage", "forks": [ { "stages": [ { "name": "SUMMARIZE_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 13.4234986, "core_hours": 0.0037287496111111113, "maxrss": 1045660, "maxvmem": 2673736, "maxrss_requested": 8388608, "maxvmem_requested": 11534336, "in_blocks": 0, "out_blocks": 33896, "total_blocks": 33896, "in_blocks_rate": 0, "out_blocks_rate": 2525.124113321694, "total_blocks_rate": 2525.124113321694, "in_bytes": 491520, "out_bytes": 0, "in_bytes_rate": 36616.38553752298, "out_bytes_rate": 0, "in_bytes_peak": 95012.3240724397, "out_bytes_peak": 0, "start": "2021-12-15T16:25:49Z", "end": "2021-12-15T16:26:03Z", "walltime": 14, "usertime": 11.043215, "systemtime": 0.546156, "total_files": 3, "total_bytes": 4127882, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 46464.66059814656, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 13.4234986, "core_hours": 0.0037287496111111113, "maxrss": 1045660, "maxvmem": 2673736, "maxrss_requested": 8388608, "maxvmem_requested": 11534336, "in_blocks": 0, "out_blocks": 33896, "total_blocks": 33896, "in_blocks_rate": 0, "out_blocks_rate": 2525.124113321694, "total_blocks_rate": 2525.124113321694, "in_bytes": 491520, "out_bytes": 0, "in_bytes_rate": 36616.38553752298, "out_bytes_rate": 0, "in_bytes_peak": 95012.3240724397, "out_bytes_peak": 0, "start": "2021-12-15T16:25:49Z", "end": "2021-12-15T16:26:03Z", "walltime": 14, "usertime": 11.043215, "systemtime": 0.546156, "total_files": 4, "total_bytes": 16870343, "output_files": 3, "output_bytes": 4127882, "vdr_files": 1, "vdr_bytes": 12742461, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "VDJ_B_REPORTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER", "type": "pipeline", "forks": [ { "stages": [ { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS", "forki": 0 }, { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS", "forki": 0 }, { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS", "forki": 0 }, { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO", "forki": 0 }, { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS", "type": "stage", "forks": [ { "stages": [ { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS", "type": "stage", "forks": [ { "stages": [ { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS", "type": "stage", "forks": [ { "stages": [ { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "VDJ_T_REPORTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER", "type": "pipeline", "forks": [ { "stages": [ { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS", "forki": 0 }, { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS", "forki": 0 }, { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS", "forki": 0 }, { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS", "forki": 0 }, { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS", "type": "stage", "forks": [ { "stages": [ { "name": "REPORT_CONTIGS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS", "type": "stage", "forks": [ { "stages": [ { "name": "SUMMARIZE_VDJ_REPORTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS", "type": "stage", "forks": [ { "stages": [ { "name": "VLOUPE_PREPROCESS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CONTIG_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CONTIG_PROTO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "MULTI_WEBSUMMARY_BUILDER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER", "type": "pipeline", "forks": [ { "stages": [], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SAMPLE_ANALYZER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SAMPLE_ANALYZER", "type": "pipeline", "forks": [ { "stages": [], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SAMPLE_REPORTER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SAMPLE_REPORTER", "type": "pipeline", "forks": [ { "stages": [], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SANITIZE_MAP_CALLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS", "type": "stage", "forks": [ { "stages": [ { "name": "SANITIZE_MAP_CALLS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "SPLIT_VDJ_INPUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS", "type": "stage", "forks": [ { "stages": [ { "name": "SPLIT_VDJ_INPUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "STRUCTIFY_PER_SAMPLE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS", "type": "stage", "forks": [ { "stages": [ { "name": "STRUCTIFY_PER_SAMPLE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.376596262, "core_hours": 0.00010461007277777779, "maxrss": 22168, "maxvmem": 1116752, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 88, "total_blocks": 88, "in_blocks_rate": 0, "out_blocks_rate": 233.6719953954296, "total_blocks_rate": 233.6719953954296, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:20Z", "end": "2021-12-15T16:23:20Z", "walltime": 0, "usertime": 0.061529, "systemtime": 0.019225, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 0.376596262, "core_hours": 0.00010461007277777779, "maxrss": 22168, "maxvmem": 1116752, "maxrss_requested": 1048576, "maxvmem_requested": 4194304, "in_blocks": 0, "out_blocks": 88, "total_blocks": 88, "in_blocks_rate": 0, "out_blocks_rate": 233.6719953954296, "total_blocks_rate": 233.6719953954296, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "2021-12-15T16:23:20Z", "end": "2021-12-15T16:23:20Z", "walltime": 0, "usertime": 0.061529, "systemtime": 0.019225, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "VDJ_B_CLONOTYPE_ASSIGNER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER", "type": "pipeline", "forks": [ { "stages": [ { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "forki": 0 }, { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "forki": 0 }, { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "forki": 0 }, { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "forki": 0 }, { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "forki": 0 }, { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "forki": 0 }, { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "forki": 0 }, { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "forki": 0 }, { "name": "HANDLE_NO_VDJ_REF", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CLONOTYPE_ASSIGNER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER", "type": "pipeline", "forks": [ { "stages": [ { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "forki": 0 }, { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "forki": 0 }, { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "forki": 0 }, { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "forki": 0 }, { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "forki": 0 }, { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "forki": 0 }, { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "forki": 0 }, { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "type": "stage", "forks": [ { "stages": [ { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "type": "stage", "forks": [ { "stages": [ { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "type": "stage", "forks": [ { "stages": [ { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "HANDLE_NO_VDJ_REF", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF", "type": "stage", "forks": [ { "stages": [ { "name": "HANDLE_NO_VDJ_REF", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "VDJ_T_CLONOTYPE_ASSIGNER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER", "type": "pipeline", "forks": [ { "stages": [ { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "forki": 0 }, { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "forki": 0 }, { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "forki": 0 }, { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "forki": 0 }, { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "forki": 0 }, { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "forki": 0 }, { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "forki": 0 }, { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "forki": 0 }, { "name": "HANDLE_NO_VDJ_REF", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CLONOTYPE_ASSIGNER", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER", "type": "pipeline", "forks": [ { "stages": [ { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "forki": 0 }, { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "forki": 0 }, { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "forki": 0 }, { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "forki": 0 }, { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "forki": 0 }, { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "forki": 0 }, { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "forki": 0 }, { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "type": "stage", "forks": [ { "stages": [ { "name": "CREATE_AIRR_TSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "type": "stage", "forks": [ { "stages": [ { "name": "FILL_CLONOTYPE_INFO", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "type": "stage", "forks": [ { "stages": [ { "name": "RUN_ENCLONE", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_ANN_CSV", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CLONOTYPE_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CONCAT_REF_OUTS", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CONSENSUS_BAM", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_CONSENSUS_TXT", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "HANDLE_NO_VDJ_REF", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF", "type": "stage", "forks": [ { "stages": [ { "name": "HANDLE_NO_VDJ_REF", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF", "forki": 0 } ], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "WRITE_GENE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.WRITE_GENE_INDEX", "type": "stage", "forks": [ { "stages": [ { "name": "WRITE_GENE_INDEX", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS.WRITE_GENE_INDEX", "forki": 0 } ], "index": 0, "chunks": [ { "index": 0, "chunk_stats": { "num_jobs": 1, "num_threads": 1, "duration": 103.212796936, "core_hours": 0.028670221371111113, "maxrss": 1716624, "maxvmem": 2429356, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 193904, "total_blocks": 193904, "in_blocks_rate": 0, "out_blocks_rate": 1878.6817696669495, "total_blocks_rate": 1878.6817696669495, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 79.37000297627512, "out_bytes_rate": 0, "in_bytes_peak": 16279.995865055931, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:42:08Z", "walltime": 104, "usertime": 6.4600800000000005, "systemtime": 2.3492129999999998, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 1147.4823184587747, "out_bytes_dev": 0 } } ], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 1, "num_threads": 1, "duration": 103.212796936, "core_hours": 0.028670221371111113, "maxrss": 1716624, "maxvmem": 2429356, "maxrss_requested": 6291456, "maxvmem_requested": 9437184, "in_blocks": 0, "out_blocks": 193904, "total_blocks": 193904, "in_blocks_rate": 0, "out_blocks_rate": 1878.6817696669495, "total_blocks_rate": 1878.6817696669495, "in_bytes": 8192, "out_bytes": 0, "in_bytes_rate": 79.37000297627512, "out_bytes_rate": 0, "in_bytes_peak": 16279.995865055931, "out_bytes_peak": 0, "start": "2021-12-15T15:40:24Z", "end": "2021-12-15T15:42:08Z", "walltime": 104, "usertime": 6.4600800000000005, "systemtime": 2.3492129999999998, "total_files": 1, "total_bytes": 99236674, "output_files": 0, "output_bytes": 0, "vdr_files": 1, "vdr_bytes": 99236674, "in_bytes_dev": 9.5367431640625e-7, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null }, { "name": "_STRUCTIFY", "fqname": "ID.scRNAseq_10x_E14_mES_WT_dec_21_V6_mm10_2020.SC_RNA_COUNTER_CS._STRUCTIFY", "type": "pipeline", "forks": [ { "stages": [], "index": 0, "chunks": [], "split_stats": null, "join_stats": null, "fork_stats": { "num_jobs": 0, "num_threads": 0, "duration": 0, "core_hours": 0, "maxrss": 0, "maxvmem": 0, "maxrss_requested": 0, "maxvmem_requested": 0, "in_blocks": 0, "out_blocks": 0, "total_blocks": 0, "in_blocks_rate": 0, "out_blocks_rate": 0, "total_blocks_rate": 0, "in_bytes": 0, "out_bytes": 0, "in_bytes_rate": 0, "out_bytes_rate": 0, "in_bytes_peak": 0, "out_bytes_peak": 0, "start": "0001-01-01T00:00:00Z", "end": "0001-01-01T00:00:00Z", "walltime": 0, "usertime": 0, "systemtime": 0, "total_files": 0, "total_bytes": 0, "output_files": 0, "output_bytes": 0, "vdr_files": 0, "vdr_bytes": 0, "in_bytes_dev": 0, "out_bytes_dev": 0 } } ], "maxbytes": 0, "bytehist": null } ]