{ "summary": { "before_filtering": { "total_reads":37013883, "total_bases":1554583086, "q20_bases":1524351442, "q30_bases":1456576981, "q20_rate":0.980553, "q30_rate":0.936957, "read1_mean_length":42, "gc_content":0.424572 }, "after_filtering": { "total_reads":36695829, "total_bases":1541115724, "q20_bases":1513790997, "q30_bases":1447105717, "q20_rate":0.98227, "q30_rate":0.938999, "read1_mean_length":41, "gc_content":0.423863 } }, "filtering_result": { "passed_filter_reads": 36695829, "low_quality_reads": 115661, "too_many_N_reads": 0, "too_short_reads": 202393, "too_long_reads": 0 }, "duplication": { "rate": 0.387435, "histogram": [4731061,1812701,672954,253787,101192,43071,19314,9388,4844,2637,1558,952,626,410,249,164,125,93,68,45,35,31,12,15,10,9,5,9,2,4,66], "mean_gc": 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"A":[31.9288,31.9855,32.0023,35.6351,35.4339,35.4506,35.3742,35.3637,36.8705,36.8446,36.7837,36.7368,36.7279,37.8813,37.8215,37.7653,37.7091,37.6381,37.6636,37.5968,37.5507,37.4927,37.4333,37.2934,37.2409,37.0069,36.9274,36.7969,36.6617,37.1458,37.2525,37.3087,37.4036,37.4705,37.4173,37.3694,37.4004,37.3762,37.3085,37.2543,37.1524,37.0241], "T":[31.6818,31.619,31.728,35.3771,35.0669,35.0544,35.0079,35.0249,36.5933,36.5373,36.4933,36.4515,36.4353,37.4748,37.3857,37.3667,37.311,37.2376,37.3203,37.2637,37.1857,37.1048,37.0199,36.9291,36.9145,36.616,36.541,36.4048,36.2873,36.8399,36.9296,36.9578,37.1122,37.138,37.0521,37.0399,36.9472,37.0185,36.8815,36.8397,36.8225,36.6346], "C":[31.6018,32.125,32.1446,35.751,35.608,35.5467,35.5147,35.4957,37.0531,37.0328,36.9848,36.9528,36.9432,38.1513,38.1103,38.0642,38.0149,37.9696,37.9685,37.9092,37.8389,37.7606,37.682,37.6532,37.5333,37.4147,37.271,37.1307,37.0057,37.427,37.5177,37.5011,37.6425,37.6456,37.6377,37.5762,37.5346,37.4742,37.3698,37.2655,37.1608,37.0638], "G":[31.4429,32.1151,32.0209,35.6375,35.451,35.3559,35.4017,35.3705,36.8356,36.7983,36.7607,36.7054,36.6649,37.833,37.7648,37.707,37.6517,37.5897,37.5836,37.5097,37.4596,37.339,37.2132,37.1451,37.0191,36.8202,36.6302,36.4967,36.3909,36.8066,36.9045,36.894,37.0248,37.0886,36.996,36.9815,36.9692,36.8254,36.8211,36.6642,36.5642,36.4804], "mean":[31.7104,31.9393,31.9624,35.5894,35.3741,35.3491,35.3123,35.3,36.8229,36.7904,36.7408,36.6984,36.6774,37.8177,37.7512,37.7081,37.6519,37.5862,37.6189,37.5514,37.4914,37.4071,37.3244,37.2392,37.1634,36.9469,36.8306,36.6936,36.5711,37.0444,37.1458,37.1625,37.2933,37.334,37.2691,37.2384,37.2077,37.1752,37.0953,37.0143,36.9343,36.8076] }, "content_curves": { "A":[0.39529,0.34354,0.315352,0.303783,0.313091,0.320083,0.318198,0.30683,0.294661,0.305875,0.300072,0.296806,0.301309,0.293602,0.299401,0.292797,0.291638,0.290694,0.290357,0.289901,0.289875,0.294599,0.29456,0.288627,0.288663,0.288833,0.28799,0.293425,0.2873,0.287393,0.288006,0.293226,0.287892,0.286931,0.287103,0.29337,0.288458,0.287556,0.286854,0.292437,0.287565,0.286861], "T":[0.220957,0.262165,0.266341,0.274707,0.268972,0.258031,0.2632,0.275183,0.283316,0.274588,0.277608,0.278394,0.279949,0.278846,0.277479,0.278083,0.27779,0.283235,0.277898,0.283591,0.278237,0.28004,0.281068,0.280319,0.285557,0.280717,0.280701,0.280138,0.28051,0.286398,0.280013,0.280392,0.28026,0.281285,0.280591,0.280563,0.285415,0.280633,0.286104,0.280475,0.285791,0.28092], "C":[0.20562,0.189183,0.204846,0.212906,0.202306,0.213025,0.2037,0.213655,0.210214,0.211382,0.211698,0.219809,0.213476,0.221248,0.21596,0.22033,0.215085,0.216369,0.22135,0.215937,0.215274,0.215147,0.214784,0.220179,0.214145,0.218903,0.218331,0.213796,0.213813,0.213696,0.218603,0.213175,0.219414,0.21882,0.214226,0.213022,0.212928,0.213051,0.213459,0.213403,0.213055,0.219348], 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"GTCTT":1421655, "GTCTC":1538433, "GTCTG":1529341, "GTCCA":1014153, "GTCCT":1135305, "GTCCC":973858, "GTCCG":149336, "GTCGA":121122, "GTCGT":138371, "GTCGC":157589, "GTCGG":159598, "GTGAA":1644265, "GTGAT":1402675, "GTGAC":1018400, "GTGAG":1662863, "GTGTA":988276, "GTGTT":1436829, "GTGTC":1001512, "GTGTG":1945869, "GTGCA":1467453, "GTGCT":1370216, "GTGCC":1150079, "GTGCG":245299, "GTGGA":1345076, "GTGGT":1302403, "GTGGC":1422339, "GTGGG":1403936, "GCAAA":1936722, "GCAAT":1353341, "GCAAC":1045094, "GCAAG":1507042, "GCATA":990748, "GCATT":1533382, "GCATC":933259, "GCATG":1788285, "GCACA":1899040, "GCACT":1346118, "GCACC":1014021, "GCACG":368808, "GCAGA":1906275, "GCAGT":1563743, "GCAGC":1542230, "GCAGG":1968129, "GCTAA":1154796, "GCTAT":933219, "GCTAC":829689, "GCTAG":777239, "GCTTA":930513, "GCTTT":1716581, "GCTTC":1308515, "GCTTG":1275619, "GCTCA":1705551, "GCTCT":1491271, "GCTCC":1192160, "GCTCG":199136, "GCTGA":1739187, "GCTGT":1462231, "GCTGC":1484743, "GCTGG":2404554, 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"GGTGA":1391566, "GGTGT":1100635, "GGTGC":952236, "GGTGG":1640924, "GGCAA":1509236, "GGCAT":1530830, "GGCAC":1228751, "GGCAG":2137183, "GGCTA":926382, "GGCTT":1346168, "GGCTC":1415522, "GGCTG":2272869, "GGCCA":1609968, "GGCCT":1537408, "GGCCC":1064557, "GGCCG":399786, "GGCGA":260147, "GGCGT":392376, "GGCGC":388459, "GGCGG":471919, "GGGAA":1883156, "GGGAT":1275747, "GGGAC":979415, "GGGAG":2042677, "GGGTA":701011, "GGGTT":1147868, "GGGTC":742195, "GGGTG":1258423, "GGGCA":1680036, "GGGCT":1357406, "GGGCC":1066930, "GGGCG":466544, "GGGGA":1447414, "GGGGT":999962, "GGGGC":1136630, "GGGGG":1253338 }, "overrepresented_sequences": { } }, "read1_after_filtering": { "total_reads": 36695829, "total_bases": 1541115724, "q20_bases": 1513790997, "q30_bases": 1447105717, "total_cycles": 42, "quality_curves": { "A":[31.9458,32.0247,32.0158,35.6485,35.4478,35.4641,35.4394,35.3861,36.886,36.9183,36.799,36.7529,36.7781,37.8982,37.882,37.7837,37.7301,37.6623,37.6915,37.6277,37.5853,37.5825,37.4796,37.349,37.3052,37.0858,37.0127,36.9564,36.7527,37.2383,37.3431,37.4445,37.4914,37.5568,37.5019,37.5368,37.4866,37.4614,37.3953,37.386,37.2355,37.1078], "T":[31.7058,31.6418,31.7696,35.3935,35.083,35.0713,35.0244,35.0408,36.6105,36.5544,36.5104,36.4683,36.4521,37.492,37.403,37.385,37.3326,37.3513,37.3466,37.3422,37.2177,37.1435,37.0645,36.9824,37.0313,36.6893,36.6151,36.4776,36.3605,37.0197,37.0089,37.039,37.1964,37.2266,37.1443,37.1328,37.1071,37.1126,37.0416,36.9359,36.9484,36.7344], "C":[31.6108,32.1378,32.1586,35.7876,35.6238,35.5632,35.5318,35.5122,37.072,37.0521,37.0045,37.0778,36.9642,38.2346,38.1339,38.1346,38.0418,37.9988,38.0622,37.9437,37.8777,37.805,37.7329,37.7455,37.6035,37.5277,37.3564,37.2432,37.1167,37.5433,37.6935,37.6198,37.7866,37.7721,37.7692,37.712,37.6702,37.6125,37.5095,37.4065,37.3013,37.2456], "G":[31.471,32.1277,32.0353,35.6527,35.4885,35.3804,35.4215,35.39,36.9203,36.8227,36.8444,36.7329,36.6943,37.8658,37.8009,37.7462,37.771,37.6402,37.6382,37.5717,37.5867,37.4201,37.3075,37.2573,37.1535,36.9804,36.802,36.6717,36.619,36.9772,37.0762,37.0649,37.1954,37.2564,37.2128,37.1346,37.1192,37.0292,36.9678,36.8018,36.7,36.6152], "mean":[31.7308,31.9635,31.9848,35.608,35.3936,35.3663,35.3447,35.3184,36.8539,36.8263,36.7716,36.7392,36.7075,37.8507,37.7862,37.7402,37.6952,37.644,37.6644,37.6046,37.5461,37.4704,37.3808,37.3119,37.2601,37.0463,36.9289,36.8213,36.6916,37.1845,37.2669,37.286,37.408,37.4453,37.3957,37.3742,37.3404,37.3017,37.2282,37.1381,37.0536,36.9266] }, "content_curves": { "A":[0.397638,0.340014,0.31712,0.305441,0.314796,0.321855,0.314465,0.303002,0.296215,0.302029,0.301664,0.298357,0.29745,0.295129,0.295514,0.294363,0.293214,0.292294,0.291975,0.291561,0.291554,0.290852,0.290821,0.290344,0.290422,0.290597,0.289718,0.289767,0.289009,0.289112,0.289736,0.289565,0.289649,0.288701,0.288899,0.289705,0.290259,0.289387,0.288546,0.288888,0.289284,0.288592], "T":[0.222083,0.263503,0.262239,0.276154,0.27037,0.259362,0.264559,0.276619,0.284811,0.27604,0.27908,0.279878,0.281444,0.280326,0.278969,0.279581,0.279279,0.27933,0.279427,0.279721,0.279806,0.281644,0.28269,0.281932,0.281814,0.282443,0.282479,0.281947,0.28232,0.282777,0.281775,0.282167,0.282011,0.283016,0.28232,0.282259,0.281667,0.282347,0.282498,0.28207,0.282128,0.282602], "C":[0.206658,0.190203,0.20597,0.208625,0.203484,0.21426,0.204904,0.214928,0.211483,0.212674,0.212999,0.215707,0.214777,0.217169,0.217306,0.216216,0.216414,0.217716,0.217247,0.21727,0.216601,0.216453,0.216091,0.216081,0.215399,0.214687,0.2141,0.214923,0.214971,0.214822,0.214325,0.214274,0.215124,0.214549,0.215286,0.21407,0.213973,0.214052,0.214527,0.214442,0.213966,0.215048], 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"ATTGC":1313456, "ATTGG":1095770, "ATCAA":1758868, "ATCAT":1907374, "ATCAC":1499926, "ATCAG":1498840, "ATCTA":1272303, "ATCTT":1854185, "ATCTC":1701133, "ATCTG":1723259, "ATCCA":1595429, "ATCCT":1577048, "ATCCC":1340472, "ATCCG":201140, "ATCGA":288941, "ATCGT":218942, "ATCGC":235062, "ATCGG":146615, "ATGAA":2575019, "ATGAT":1899205, "ATGAC":1275761, "ATGAG":1799843, "ATGTA":1822033, "ATGTT":2330254, "ATGTC":1377693, "ATGTG":2040785, "ATGCA":1929270, "ATGCT":1713573, "ATGCC":1555333, "ATGCG":216996, "ATGGA":2211152, "ATGGT":1520622, "ATGGC":1307760, "ATGGG":1407306, "ACAAA":3425134, "ACAAT":1771688, "ACAAC":1274112, "ACAAG":1767341, "ACATA":1955024, "ACATT":2285145, "ACATC":1306168, "ACATG":2298303, "ACACA":3098928, "ACACT":1576581, "ACACC":1291441, "ACACG":432115, "ACAGA":2627563, "ACAGT":1690383, "ACAGC":1589492, "ACAGG":2122788, "ACTAA":1461670, "ACTAT":1249828, "ACTAC":924077, "ACTAG":891439, "ACTTA":1349932, "ACTTT":2263461, "ACTTC":1467792, "ACTTG":1681733, "ACTCA":1747261, "ACTCT":1618426, "ACTCC":1497548, "ACTCG":278716, "ACTGA":1698002, "ACTGT":1644662, "ACTGC":1608542, "ACTGG":1466023, "ACCAA":1542847, "ACCAT":1569921, "ACCAC":1444252, "ACCAG":1534718, "ACCTA":1012819, "ACCTT":1361734, "ACCTC":1543049, "ACCTG":1801426, "ACCCA":1657871, "ACCCT":1249133, "ACCCC":1069534, "ACCCG":314363, "ACCGA":191531, "ACCGT":237842, "ACCGC":239099, "ACCGG":186376, "ACGAA":299075, "ACGAT":225679, "ACGAC":150931, "ACGAG":265710, "ACGTA":254523, "ACGTT":314653, "ACGTC":230354, "ACGTG":454386, "ACGCA":303018, "ACGCT":249492, "ACGCC":395341, "ACGCG":88085, "ACGGA":296678, "ACGGT":235176, "ACGGC":221892, "ACGGG":314596, "AGAAA":4404307, "AGAAT":2537138, "AGAAC":1626534, "AGAAG":2486367, "AGATA":1686948, "AGATT":1803243, "AGATC":1176577, "AGATG":1935313, "AGACA":2376876, "AGACT":1600272, "AGACC":1209119, "AGACG":352681, "AGAGA":2910702, "AGAGT":1606047, "AGAGC":1585896, "AGAGG":2039600, "AGTAA":1624356, "AGTAT":1298574, "AGTAC":835531, "AGTAG":1339708, "AGTTA":1346409, "AGTTT":2241675, "AGTTC":1390817, "AGTTG":1300449, "AGTCA":1655258, "AGTCT":1550287, "AGTCC":1121619, "AGTCG":163070, "AGTGA":2006979, "AGTGT":1482229, "AGTGC":1400734, "AGTGG":1659384, "AGCAA":2175412, "AGCAT":1725403, "AGCAC":1495447, "AGCAG":2194523, "AGCTA":1414392, "AGCTT":1612998, "AGCTC":1446775, "AGCTG":2242141, "AGCCA":2247470, "AGCCT":2235334, "AGCCC":1390463, "AGCCG":395029, "AGCGA":315278, "AGCGT":250748, "AGCGC":259434, "AGCGG":271512, "AGGAA":2918518, "AGGAT":1544046, "AGGAC":1210854, "AGGAG":2377932, "AGGTA":1163776, "AGGTT":1477002, "AGGTC":1055369, "AGGTG":1680789, "AGGCA":2560351, "AGGCT":2236137, "AGGCC":1591198, "AGGCG":517830, "AGGGA":1976153, "AGGGT":1182524, "AGGGC":1366502, "AGGGG":1388383, "TAAAA":4289613, "TAAAT":2847882, "TAAAC":1522877, "TAAAG":1930861, "TAATA":2046853, "TAATT":2415514, "TAATC":1369141, "TAATG":1558648, "TAACA":1702567, "TAACT":1351741, "TAACC":847983, "TAACG":174977, "TAAGA":1623198, "TAAGT":1316940, "TAAGC":974921, "TAAGG":1090491, "TATAA":2120900, "TATAT":2476001, "TATAC":1150080, "TATAG":1131710, "TATTA":1944325, "TATTT":3732291, "TATTC":1553885, "TATTG":1400960, "TATCA":1414387, "TATCT":1585634, "TATCC":964840, "TATCG":135751, "TATGA":1490731, "TATGT":1779057, "TATGC":991787, "TATGG":1045825, "TACAA":1930381, "TACAT":1807981, "TACAC":1104172, "TACAG":1792019, "TACTA":1172612, "TACTT":1590306, "TACTC":998913, "TACTG":1275452, "TACCA":1233812, "TACCT":1188696, "TACCC":761419, "TACCG":135568, "TACGA":161207, "TACGT":241794, "TACGC":128667, "TACGG":148081, "TAGAA":1983714, "TAGAT":1221446, "TAGAC":850432, "TAGAG":1350060, "TAGTA":1084210, "TAGTT":1285865, "TAGTC":809523, "TAGTG":951657, "TAGCA":1286007, "TAGCT":1366885, "TAGCC":956539, "TAGCG":130038, "TAGGA":1242764, "TAGGT":906914, "TAGGC":854564, "TAGGG":843143, "TTAAA":3342811, "TTAAT":2096212, "TTAAC":1201822, "TTAAG":1499946, "TTATA":1991635, "TTATT":2908453, "TTATC":1266538, "TTATG":1509651, "TTACA":2017793, "TTACT":1511570, "TTACC":960733, "TTACG":189403, "TTAGA":1465997, "TTAGT":1251966, "TTAGC":1154171, "TTAGG":1082481, "TTTAA":3157208, "TTTAT":3044579, "TTTAC":1531643, "TTTAG":1663320, "TTTTA":3586740, "TTTTT":6498019, "TTTTC":2979903, "TTTTG":2924512, "TTTCA":2866185, "TTTCT":3526092, "TTTCC":2365899, "TTTCG":253929, "TTTGA":2318829, "TTTGT":2724259, "TTTGC":1721746, "TTTGG":2022438, "TTCAA":2410932, "TTCAT":2291164, "TTCAC":1648358, "TTCAG":2040863, "TTCTA":1837584, "TTCTT":2892784, "TTCTC":2269692, "TTCTG":2474385, "TTCCA":2655756, "TTCCT":2563373, "TTCCC":1784834, "TTCCG":261036, "TTCGA":348518, "TTCGT":262305, "TTCGC":165776, "TTCGG":198231, "TTGAA":2340204, "TTGAT":1492345, "TTGAC":991735, "TTGAG":1699529, "TTGTA":1665121, "TTGTT":2274709, "TTGTC":1267335, "TTGTG":1675311, "TTGCA":1870265, "TTGCT":1909345, "TTGCC":1420258, "TTGCG":188731, "TTGGA":1573462, "TTGGT":1269666, "TTGGC":1363788, "TTGGG":1547683, "TCAAA":2622236, "TCAAT":1483643, "TCAAC":1202211, "TCAAG":1746008, "TCATA":1466668, "TCATT":2279405, "TCATC":1564419, "TCATG":1750973, "TCACA":2085641, "TCACT":1966315, "TCACC":1477540, "TCACG":391353, "TCAGA":1987146, "TCAGT":1581720, "TCAGC":1764974, "TCAGG":1840817, "TCTAA":1490957, "TCTAT":1420371, "TCTAC":1184764, "TCTAG":1159784, "TCTTA":1498929, "TCTTT":2823674, "TCTTC":1902922, "TCTTG":1783666, "TCTCA":2345381, "TCTCT":2538891, "TCTCC":1901393, "TCTCG":390287, "TCTGA":1936114, "TCTGT":2343378, "TCTGC":1844008, "TCTGG":1761155, "TCCAA":1707744, "TCCAT":2077456, "TCCAC":1467399, "TCCAG":2077661, "TCCTA":1246714, "TCCTT":2073757, "TCCTC":1773750, "TCCTG":2435677, "TCCCA":2509371, "TCCCT":1841497, "TCCCC":1383945, "TCCCG":413019, "TCCGA":178092, "TCCGT":278437, "TCCGC":271779, "TCCGG":230012, "TCGAA":376617, "TCGAT":264438, "TCGAC":124102, "TCGAG":273705, "TCGTA":155130, "TCGTT":247886, "TCGTC":177011, "TCGTG":276601, "TCGCA":194618, "TCGCT":288323, "TCGCC":255442, "TCGCG":75390, "TCGGA":175375, "TCGGT":163854, "TCGGC":294448, "TCGGG":282295, "TGAAA":3103926, "TGAAT":2125119, "TGAAC":1484060, "TGAAG":1927934, "TGATA":1360510, "TGATT":1922686, "TGATC":1183502, "TGATG":1701896, "TGACA":1695616, "TGACT":1575196, "TGACC":1085160, "TGACG":239550, "TGAGA":2296833, "TGAGT":1588488, "TGAGC":1647151, "TGAGG":1951255, "TGTAA":2000192, "TGTAT":1828886, "TGTAC":1040601, "TGTAG":1279354, "TGTTA":1540093, "TGTTT":2871090, "TGTTC":1559764, "TGTTG":1816287, "TGTCA":1660932, "TGTCT":2072115, "TGTCC":1276329, "TGTCG":206113, "TGTGA":1966339, "TGTGT":2445535, "TGTGC":1562529, "TGTGG":1785853, "TGCAA":1973512, "TGCAT":1784880, "TGCAC":1459059, "TGCAG":2338311, "TGCTA":1234039, "TGCTT":2020721, "TGCTC":1469425, "TGCTG":2250722, "TGCCA":1892792, "TGCCT":2409355, "TGCCC":1616022, "TGCCG":279653, "TGCGA":192350, "TGCGT":271067, "TGCGC":245814, "TGCGG":267173, "TGGAA":2721434, "TGGAT":1415775, "TGGAC":1012442, "TGGAG":2049799, "TGGTA":1111881, "TGGTT":1436565, "TGGTC":1063122, "TGGTG":1833816, "TGGCA":1912755, "TGGCT":2015529, "TGGCC":1563436, "TGGCG":373436, "TGGGA":2356284, "TGGGT":1415231, "TGGGC":1660330, "TGGGG":1729359, "CAAAA":3659200, "CAAAT":2472168, "CAAAC":1795146, "CAAAG":2447644, "CAATA":1537869, "CAATT":1628344, "CAATC":1078617, "CAATG":1542742, "CAACA":2065045, "CAACT":1352166, "CAACC":1111020, "CAACG":254533, "CAAGA":2006802, "CAAGT":1726274, "CAAGC":1454212, "CAAGG":1613119, "CATAA":1677661, "CATAT":1709973, "CATAC":1021171, "CATAG":1146785, "CATTA":1565799, "CATTT":3047300, "CATTC":2115747, "CATTG":1468828, "CATCA":1822115, "CATCT":1895047, "CATCC":1305360, "CATCG":270056, "CATGA":1848840, "CATGT":2199399, "CATGC":1812336, "CATGG":1718392, "CACAA":1940004, "CACAT":2125234, "CACAC":2468835, "CACAG":2381541, "CACTA":1026239, "CACTT":1917995, "CACTC":1478741, "CACTG":2168322, "CACCA":1989966, "CACCT":1822730, "CACCC":1446644, "CACCG":357438, "CACGA":297196, "CACGT":456815, "CACGC":509098, "CACGG":370039, "CAGAA":2762903, "CAGAT":1715444, "CAGAC":1449272, "CAGAG":2551060, "CAGTA":1285193, "CAGTT":1652453, "CAGTC":1208805, "CAGTG":2153270, "CAGCA":2416608, "CAGCT":2204702, "CAGCC":2343853, "CAGCG":367460, "CAGGA":2468757, "CAGGT":1688099, "CAGGC":2537805, "CAGGG":1958760, "CTAAA":1898874, "CTAAT":1412434, "CTAAC":872103, "CTAAG":1113295, "CTATA":1144373, "CTATT":1482154, "CTATC":812589, "CTATG":1123288, "CTACA":1390350, "CTACT":1364787, "CTACC":837835, "CTACG":166496, "CTAGA":1221925, "CTAGT":833535, "CTAGC":783628, "CTAGG":1000080, "CTTAA":1519121, "CTTAT":1281814, "CTTAC":951771, "CTTAG":1059850, "CTTTA":1744897, "CTTTT":2824162, "CTTTC":1977510, "CTTTG":2145687, "CTTCA":1892682, "CTTCT":2151379, "CTTCC":1955358, "CTTCG":241573, "CTTGA":1658979, "CTTGT":1540428, "CTTGC":1425569, "CTTGG":1592513, "CTCAA":1917894, "CTCAT":1713262, "CTCAC":1769010, "CTCAG":2432999, "CTCTA":1377733, "CTCTT":1942975, "CTCTC":1734075, "CTCTG":2437460, "CTCCA":2105191, "CTCCT":2314998, "CTCCC":2092537, "CTCCG":361785, "CTCGA":296825, "CTCGT":249922, "CTCGC":269181, "CTCGG":431244, "CTGAA":2134477, "CTGAT":1408928, "CTGAC":1344821, "CTGAG":2377679, "CTGTA":1752636, "CTGTT":1868927, "CTGTC":1643442, "CTGTG":2210164, "CTGCA":2367703, "CTGCT":2065105, "CTGCC":2148976, "CTGCG":343714, "CTGGA":2097306, "CTGGT":1401480, "CTGGC":1824939, "CTGGG":2839273, "CCAAA":2341405, "CCAAT":1137656, "CCAAC":1249098, "CCAAG":1740522, "CCATA":1101573, "CCATT":2093672, "CCATC":1468771, "CCATG":1693958, "CCACA":1982071, "CCACT":1680033, "CCACC":1813471, "CCACG":443593, "CCAGA":1897744, "CCAGT":1441482, "CCAGC":2414860, "CCAGG":2659698, "CCTAA":1184293, "CCTAT":967655, "CCTAC":829678, "CCTAG":1012847, "CCTTA":1058012, "CCTTT":2013281, "CCTTC":1621628, "CCTTG":1516448, "CCTCA":2068374, "CCTCT":1898953, "CCTCC":2331269, "CCTCG":390898, "CCTGA":1921341, "CCTGT":2051604, "CCTGC":2014623, "CCTGG":2560987, "CCCAA":1750469, "CCCAT":1427075, "CCCAC":1561920, "CCCAG":2930177, "CCCTA":879699, "CCCTT":1422467, "CCCTC":1417135, "CCCTG":1914242, "CCCCA":1826386, "CCCCT":1260427, "CCCCC":960175, "CCCCG":440328, "CCCGA":306296, "CCCGT":319611, "CCCGC":426994, "CCCGG":524923, "CCGAA":215663, "CCGAT":147156, "CCGAC":171308, "CCGAG":431867, "CCGTA":149971, "CCGTT":245522, "CCGTC":294727, "CCGTG":353082, "CCGCA":287173, "CCGCT":267626, "CCGCC":509928, "CCGCG":159162, "CCGGA":233600, "CCGGT":175378, "CCGGC":389100, "CCGGG":527824, "CGAAA":281822, "CGAAT":334362, "CGAAC":188779, "CGAAG":253978, "CGATA":135587, "CGATT":268597, "CGATC":198962, "CGATG":263645, "CGACA":211067, "CGACT":162514, "CGACC":149831, "CGACG":68550, "CGAGA":377697, "CGAGT":266885, "CGAGC":217120, "CGAGG":370920, "CGTAA":193170, "CGTAT":201226, "CGTAC":120970, "CGTAG":160588, "CGTTA":166231, "CGTTT":353503, "CGTTC":233268, "CGTTG":231122, "CGTCA":236126, "CGTCT":353690, "CGTCC":215253, "CGTCG":64308, "CGTGA":398405, "CGTGT":380710, "CGTGC":347010, "CGTGG":421417, "CGCAA":205535, "CGCAT":214837, "CGCAC":263650, "CGCAG":351874, "CGCTA":129774, "CGCTT":283750, "CGCTC":274493, "CGCTG":351741, "CGCCA":370117, "CGCCT":524812, "CGCCC":460072, "CGCCG":152512, "CGCGA":78488, "CGCGT":80269, "CGCGC":176277, "CGCGG":152600, "CGGAA":275950, "CGGAT":175768, "CGGAC":150867, "CGGAG":347615, "CGGTA":128399, "CGGTT":178382, "CGGTC":149463, "CGGTG":327725, "CGGCA":284275, "CGGCT":360723, "CGGCC":388526, "CGGCG":147600, "CGGGA":388941, "CGGGT":260554, "CGGGC":407540, "CGGGG":430320, "GAAAA":3617594, "GAAAT":2575688, "GAAAC":1898489, "GAAAG":2313859, "GAATA":1637342, "GAATT":1809425, "GAATC":1345667, "GAATG":2177049, "GAACA":1730172, "GAACT":1428581, "GAACC":958561, "GAACG":249386, "GAAGA":2152967, "GAAGT":1450347, "GAAGC":1391522, "GAAGG":1741286, "GATAA":1340124, "GATAT":1227919, "GATAC":735022, "GATAG":802332, "GATTA":1317959, "GATTT":1802680, "GATTC":1282545, "GATTG":983926, "GATCA":1185301, "GATCT":1138192, "GATCC":825855, "GATCG":184286, "GATGA":1585218, "GATGT":1226888, "GATGC":933107, "GATGG":1399491, "GACAA":1422849, "GACAT":1386966, "GACAC":1109297, "GACAG":1685478, "GACTA":839337, "GACTT":1325133, "GACTC":1066217, "GACTG":1184212, "GACCA":1116522, "GACCT":1100541, "GACCC":757087, "GACCG":158278, "GACGA":191560, "GACGT":223036, "GACGC":186904, "GACGG":278318, "GAGAA":2495424, "GAGAT":1612695, "GAGAC":1508497, "GAGAG":1881751, "GAGTA":977213, "GAGTT":1398937, "GAGTC":1037518, "GAGTG":1424630, "GAGCA":1519414, "GAGCT":1408205, "GAGCC":1397229, "GAGCG":279951, "GAGGA":1820885, "GAGGT":1369504, "GAGGC":1925120, "GAGGG":1474514, "GTAAA":1598620, "GTAAT":1402817, "GTAAC":778512, "GTAAG":942863, "GTATA":1076267, "GTATT":1432780, "GTATC":693755, "GTATG":918594, "GTACA":1065096, "GTACT":784409, "GTACC":575408, "GTACG":118340, "GTAGA":1115023, "GTAGT":840548, "GTAGC":816585, "GTAGG":758284, "GTTAA":1184284, "GTTAT":1054789, "GTTAC":757617, "GTTAG":805870, "GTTTA":1351551, "GTTTT":2369016, "GTTTC":1669132, "GTTTG":1499311, "GTTCA":1439700, "GTTCT":1423086, "GTTCC":1023913, "GTTCG":170732, "GTTGA":1123912, "GTTGT":1064194, "GTTGC":992707, "GTTGG":1128607, "GTCAA":1028747, "GTCAT":1184584, "GTCAC":1052148, "GTCAG":1295588, "GTCTA":795142, "GTCTT":1418694, "GTCTC":1533398, "GTCTG":1326715, "GTCCA":1012360, "GTCCT":1133188, "GTCCC":969174, "GTCCG":147941, "GTCGA":120528, "GTCGT":137742, "GTCGC":156284, "GTCGG":157233, "GTGAA":1642249, "GTGAT":1399735, "GTGAC":1016847, "GTGAG":1659578, "GTGTA":986976, "GTGTT":1434610, "GTGTC":999594, "GTGTG":1941135, "GTGCA":1465030, "GTGCT":1367649, "GTGCC":1147392, "GTGCG":243717, "GTGGA":1341980, "GTGGT":1299614, "GTGGC":1413827, "GTGGG":1395092, "GCAAA":1933029, "GCAAT":1351283, "GCAAC":1043409, "GCAAG":1503622, "GCATA":989170, "GCATT":1531227, "GCATC":931581, "GCATG":1784061, "GCACA":1695810, "GCACT":1342474, "GCACC":1010416, "GCACG":366147, "GCAGA":1901043, "GCAGT":1560478, "GCAGC":1536686, "GCAGG":1954932, "GCTAA":1152998, "GCTAT":931879, "GCTAC":827817, "GCTAG":775362, "GCTTA":929145, "GCTTT":1711120, "GCTTC":1305674, "GCTTG":1270798, "GCTCA":1701854, "GCTCT":1487560, "GCTCC":1187001, "GCTCG":196638, "GCTGA":1733666, "GCTGT":1458583, "GCTGC":1479138, "GCTGG":2391913, "GCCAA":1467232, "GCCAT":1279499, "GCCAC":1460544, "GCCAG":1888236, "GCCTA":853988, "GCCTT":1401307, "GCCTC":1995877, "GCCTG":2414917, "GCCCA":1677159, "GCCCT":1300112, "GCCCC":1097690, "GCCCG":418598, "GCCGA":296465, "GCCGT":213820, "GCCGC":299384, "GCCGG":397148, "GCGAA":177192, "GCGAT":236790, "GCGAC":152281, "GCGAG":269912, "GCGTA":125615, "GCGTT":192736, "GCGTC":181218, "GCGTG":484105, "GCGCA":262291, "GCGCT":247021, "GCGCC":367530, "GCGCG":172770, "GCGGA":248534, "GCGGT":215974, "GCGGC":288843, "GCGGG":369637, "GGAAA":2639756, "GGAAT":1993078, "GGAAC":1086202, "GGAAG":2079544, "GGATA":938850, "GGATT":1428732, "GGATC":780245, "GGATG":1260653, "GGACA":1340989, "GGACT":1095334, "GGACC":688554, "GGACG":221979, "GGAGA":1934715, "GGAGT":1416125, "GGAGC":1189771, "GGAGG":2252393, "GGTAA":928154, "GGTAT":825924, "GGTAC":562937, "GGTAG":770998, "GGTTA":784201, "GGTTT":1519249, "GGTTC":912409, "GGTTG":996803, "GGTCA":1042279, "GGTCT":1141420, "GGTCC":672663, "GGTCG":142621, "GGTGA":1388846, "GGTGT":1097688, "GGTGC":949213, "GGTGG":1632303, "GGCAA":1505102, "GGCAT":1526653, "GGCAC":1223736, "GGCAG":2122417, "GGCTA":923867, "GGCTT":1338665, "GGCTC":1407987, "GGCTG":2258167, "GGCCA":1603956, "GGCCT":1531362, "GGCCC":1051880, "GGCCG":390423, "GGCGA":257458, "GGCGT":388345, "GGCGC":381350, "GGCGG":445555, "GGGAA":1870845, "GGGAT":1268824, "GGGAC":973424, "GGGAG":2025024, "GGGTA":698464, "GGGTT":1136617, "GGGTC":735368, "GGGTG":1249997, "GGGCA":1667677, "GGGCT":1346862, "GGGCC":1050966, "GGGCG":451230, "GGGGA":1427945, "GGGGT":982330, "GGGGC":1106475, "GGGGG":1131394 }, "overrepresented_sequences": { } }, "command": "fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/SRR1528625.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/TF_chipseq/results/fastq_trimmed/SRR1528625_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/TF_chipseq/results/qc/trimming/SRR1528625.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/TF_chipseq/results/qc/trimming/SRR1528625.fastp.json " }