Sample	command
GSM4728059	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM4728059_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM4728059_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/GSM4728059_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/GSM4728059_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/GSM4728059.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/GSM4728059.fastp.json 
GSM4728060	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM4728060_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM4728060_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/GSM4728060_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/GSM4728060_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/GSM4728060.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/GSM4728060.fastp.json 
GSM915329	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM915329_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM915329_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/GSM915329_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/GSM915329_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/GSM915329.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/GSM915329.fastp.json 
GSM958733	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM958733_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM958733_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/GSM958733_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/GSM958733_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/GSM958733.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/GSM958733.fastp.json 
PKC19_RNA_1	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/PKC19_RNA_1_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/PKC19_RNA_1_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/PKC19_RNA_1_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/PKC19_RNA_1_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/PKC19_RNA_1.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/PKC19_RNA_1.fastp.json 
PKC19_RNA_2	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/PKC19_RNA_2_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/PKC19_RNA_2_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/PKC19_RNA_2_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/PKC19_RNA_2_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/PKC19_RNA_2.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/PKC19_RNA_2.fastp.json 
PKC19_RNA_3JQ	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/PKC19_RNA_3JQ_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/PKC19_RNA_3JQ_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/PKC19_RNA_3JQ_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/PKC19_RNA_3JQ_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/PKC19_RNA_3JQ.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/PKC19_RNA_3JQ.fastp.json 
PRIM_RNA_1	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/PRIM_RNA_1_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/PRIM_RNA_1_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/PRIM_RNA_1_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/PRIM_RNA_1_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/PRIM_RNA_1.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/PRIM_RNA_1.fastp.json 
PRIM_RNA_2	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/PRIM_RNA_2_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/PRIM_RNA_2_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/PRIM_RNA_2_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/PRIM_RNA_2_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/PRIM_RNA_2.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/PRIM_RNA_2.fastp.json 
SRR5499067	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/SRR5499067_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/SRR5499067_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/SRR5499067_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/SRR5499067_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/SRR5499067.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/SRR5499067.fastp.json 
SRR5499071	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/SRR5499071_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/SRR5499071_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/SRR5499071_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/fastq_trimmed/SRR5499071_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/SRR5499071.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/RNAseq/results/qc/trimming/SRR5499071.fastp.json