Module	Section	Sample Name	Source
fastp	all_sections	GSM4728063	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM4728063.fastp.json
fastp	all_sections	GSM4728064	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM4728064.fastp.json
fastp	all_sections	SRX663241	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/SRX663241.fastp.json
fastp	all_sections	GSM663427	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM663427.fastp.json
fastp	all_sections	Chipseq_LSC_PRIM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/Chipseq_LSC_PRIM_H3K27ac.fastp.json
fastp	all_sections	Chipseq_DOM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/Chipseq_DOM_H3K27ac.fastp.json
fastp	all_sections	GSM466732	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM466732.fastp.json
fastp	all_sections	GSM733718	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM733718.fastp.json
Picard	InsertSizeMetrics	GSM4728064	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/InsertSizeMetrics/GRCh38.p13-GSM4728064.tsv
Picard	InsertSizeMetrics	GSM4728063	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/InsertSizeMetrics/GRCh38.p13-GSM4728063.tsv
Picard	InsertSizeMetrics	Chipseq_DOM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/InsertSizeMetrics/GRCh38.p13-Chipseq_DOM_H3K27ac.tsv
Picard	InsertSizeMetrics	Chipseq_LSC_PRIM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/InsertSizeMetrics/GRCh38.p13-Chipseq_LSC_PRIM_H3K27ac.tsv
Picard	DuplicationMetrics	GSM733718	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/markdup/GRCh38.p13-GSM733718.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	GSM4728064	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/markdup/GRCh38.p13-GSM4728064.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	SRX663241	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/markdup/GRCh38.p13-SRX663241.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	GSM663427	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/markdup/GRCh38.p13-GSM663427.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	GSM4728063	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/markdup/GRCh38.p13-GSM4728063.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	GSM466732	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/markdup/GRCh38.p13-GSM466732.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Chipseq_DOM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/markdup/GRCh38.p13-Chipseq_DOM_H3K27ac.samtools-coordinate.metrics.txt
Picard	DuplicationMetrics	Chipseq_LSC_PRIM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/markdup/GRCh38.p13-Chipseq_LSC_PRIM_H3K27ac.samtools-coordinate.metrics.txt
SamTools pre-sieve	stats	SRX663241	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/bwa-mem/GRCh38.p13-SRX663241.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Chipseq_DOM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/bwa-mem/GRCh38.p13-Chipseq_DOM_H3K27ac.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	GSM663427	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/bwa-mem/GRCh38.p13-GSM663427.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	GSM4728064	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/bwa-mem/GRCh38.p13-GSM4728064.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	Chipseq_LSC_PRIM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/bwa-mem/GRCh38.p13-Chipseq_LSC_PRIM_H3K27ac.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	GSM4728063	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/bwa-mem/GRCh38.p13-GSM4728063.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	GSM733718	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/bwa-mem/GRCh38.p13-GSM733718.samtools-coordinate.samtools_stats.txt
SamTools pre-sieve	stats	GSM466732	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/bwa-mem/GRCh38.p13-GSM466732.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	GSM4728063	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/final_bam/GRCh38.p13-GSM4728063.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	GSM733718	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/final_bam/GRCh38.p13-GSM733718.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Chipseq_DOM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/final_bam/GRCh38.p13-Chipseq_DOM_H3K27ac.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	GSM4728064	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/final_bam/GRCh38.p13-GSM4728064.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	Chipseq_LSC_PRIM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/final_bam/GRCh38.p13-Chipseq_LSC_PRIM_H3K27ac.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	GSM466732	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/final_bam/GRCh38.p13-GSM466732.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	SRX663241	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/final_bam/GRCh38.p13-SRX663241.samtools-coordinate.samtools_stats.txt
SamTools post-sieve	stats	GSM663427	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/samtools_stats/final_bam/GRCh38.p13-GSM663427.samtools-coordinate.samtools_stats.txt
deepTools	plotPCA	GRCh38.p13	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/plotPCA/GRCh38.p13.tsv
deepTools	plotFingerprint	GRCh38.p13	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/plotFingerprint/GRCh38.p13.tsv
deepTools	plotProfile	macs2	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/plotProfile/GRCh38.p13-macs2.tsv
macs2_frips	all_sections	SRX663241	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/macs2/GRCh38.p13-SRX663241_featureCounts.txt.summary
macs2_frips	all_sections	GSM466732	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/macs2/GRCh38.p13-GSM466732_featureCounts.txt.summary
macs2_frips	all_sections	GSM4728064	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/macs2/GRCh38.p13-GSM4728064_featureCounts.txt.summary
macs2_frips	all_sections	Chipseq_DOM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/macs2/GRCh38.p13-Chipseq_DOM_H3K27ac_featureCounts.txt.summary
macs2_frips	all_sections	Chipseq_LSC_PRIM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/macs2/GRCh38.p13-Chipseq_LSC_PRIM_H3K27ac_featureCounts.txt.summary
macs2_frips	all_sections	GSM4728063	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/macs2/GRCh38.p13-GSM4728063_featureCounts.txt.summary
macs2_frips	all_sections	GSM733718	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/macs2/GRCh38.p13-GSM733718_featureCounts.txt.summary
macs2_frips	all_sections	GSM663427	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/macs2/GRCh38.p13-GSM663427_featureCounts.txt.summary
mtnucratio	all_sections	GSM466732	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/bwa-mem/GRCh38.p13-GSM466732.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	GSM663427	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/bwa-mem/GRCh38.p13-GSM663427.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	SRX663241	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/bwa-mem/GRCh38.p13-SRX663241.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	GSM4728063	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/bwa-mem/GRCh38.p13-GSM4728063.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	GSM4728064	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/bwa-mem/GRCh38.p13-GSM4728064.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Chipseq_LSC_PRIM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/bwa-mem/GRCh38.p13-Chipseq_LSC_PRIM_H3K27ac.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	GSM733718	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/bwa-mem/GRCh38.p13-GSM733718.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	Chipseq_DOM_H3K27ac	/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/bwa-mem/GRCh38.p13-Chipseq_DOM_H3K27ac.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json