Sample	command
Chipseq_DOM_H3K27ac	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/Chipseq_DOM_H3K27ac_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/Chipseq_DOM_H3K27ac_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/Chipseq_DOM_H3K27ac_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/Chipseq_DOM_H3K27ac_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/Chipseq_DOM_H3K27ac.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/Chipseq_DOM_H3K27ac.fastp.json 
Chipseq_LSC_PRIM_H3K27ac	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/Chipseq_LSC_PRIM_H3K27ac_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/Chipseq_LSC_PRIM_H3K27ac_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/Chipseq_LSC_PRIM_H3K27ac_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/Chipseq_LSC_PRIM_H3K27ac_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/Chipseq_LSC_PRIM_H3K27ac.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/Chipseq_LSC_PRIM_H3K27ac.fastp.json 
GSM466732	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM466732.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/GSM466732_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM466732.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM466732.fastp.json 
GSM4728063	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM4728063_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM4728063_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/GSM4728063_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/GSM4728063_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM4728063.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM4728063.fastp.json 
GSM4728064	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM4728064_R1.fastq.gz --in2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM4728064_R2.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/GSM4728064_R1_trimmed.fastq.gz --out2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/GSM4728064_R2_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM4728064.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM4728064.fastp.json 
GSM663427	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM663427.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/GSM663427_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM663427.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM663427.fastp.json 
GSM733718	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/GSM733718.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/GSM733718_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM733718.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/GSM733718.fastp.json 
SRX663241	fastp -w 2 --in1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/fastq_dir/SRX663241.fastq.gz --out1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/fastq_trimmed/SRX663241_trimmed.fastq.gz -h /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/SRX663241.fastp.html -j /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/trimming/SRX663241.fastp.json