## htsjdk.samtools.metrics.StringHeader # CollectInsertSizeMetrics HISTOGRAM_FILE=/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/InsertSizeMetrics/hg38-Chipseq_LSC_PRIM_H3K27ac.pdf INPUT=/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/final_bam/hg38-Chipseq_LSC_PRIM_H3K27ac.samtools-coordinate.bam OUTPUT=/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/InsertSizeMetrics/hg38-Chipseq_LSC_PRIM_H3K27ac.tsv DEVIATIONS=10.0 MINIMUM_PCT=0.05 METRIC_ACCUMULATION_LEVEL=[ALL_READS] INCLUDE_DUPLICATES=false ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false ## htsjdk.samtools.metrics.StringHeader # Started on: Fri Feb 19 09:49:47 CET 2021 ## METRICS CLASS picard.analysis.InsertSizeMetrics MEDIAN_INSERT_SIZE MODE_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_95_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP 180 175 10 2 228252889 179.009082 18.29005 25098820 FR 5 9 13 17 21 27 33 41 53 65 177 ## HISTOGRAM java.lang.Integer insert_size All_Reads.fr_count 2 5 3 3 4 1 5 2 7 3 8 10 9 20 10 22 11 42 12 28 13 18 14 19 15 25 16 31 17 20 18 13 19 26 20 26 21 13 22 10 23 8 24 10 25 13 26 13 27 3 28 5 29 17 30 34 31 61 32 58 33 69 34 112 35 108 36 150 37 151 38 220 39 238 40 268 41 286 42 304 43 402 44 410 45 435 46 443 47 531 48 588 49 663 50 687 51 715 52 709 53 782 54 772 55 899 56 910 57 983 58 1150 59 1201 60 1206 61 1287 62 1367 63 1378 64 1436 65 1650 66 1783 67 1909 68 2160 69 2472 70 2760 71 2845 72 3210 73 3446 74 3934 75 4285 76 4722 77 5132 78 5567 79 5881 80 6071 81 6002 82 5792 83 5933 84 5889 85 5971 86 5985 87 5979 88 6005 89 6232 90 6147 91 6148 92 6097 93 5946 94 5750 95 5732 96 5388 97 5401 98 5152 99 5073 100 4884 101 4836 102 4638 103 4375 104 4121 105 4189 106 4163 107 4223 108 4533 109 4544 110 5415 111 5651 112 5846 113 6107 114 6152 115 6571 116 6882 117 7141 118 7609 119 8106 120 8631 121 9063 122 9811 123 10276 124 10728 125 11329 126 11927 127 12800 128 13305 129 14331 130 15352 131 16488 132 17952 133 19091 134 20263 135 21477 136 22783 137 24109 138 25753 139 27579 140 30146 141 32183 142 34295 143 37178 144 40007 145 43198 146 46740 147 50897 148 55247 149 61060 150 67577 151 74386 152 82558 153 91944 154 103254 155 116428 156 132026 157 149698 158 169681 159 193290 160 220736 161 249196 162 281712 163 316078 164 353923 165 392812 166 433903 167 472531 168 512148 169 550137 170 582415 171 610271 172 630913 173 646496 174 655721 175 662908 176 662530 177 660689 178 655844 179 647056 180 634996 181 622330 182 608968 183 592131 184 577019 185 561934 186 548129 187 533461 188 519780 189 505713 190 490972 191 477039 192 463487 193 448017 194 432027 195 416292 196 399883 197 382678 198 365654 199 346634 200 326978 201 306054 202 283941 203 259481 204 234991 205 210463 206 185495 207 160523 208 137030 209 115256 210 94891 211 76396 212 59666 213 45794 214 34215 215 24694 216 17638 217 12178 218 8457 219 5748 220 3793 221 2677 222 1982 223 1501 224 1197 225 1053 226 876 227 874 228 772 229 740 230 724 231 694 232 713 233 649 234 665 235 640 236 608 237 576 238 618 239 581 240 593 241 566 242 560 243 590 244 560 245 561 246 551 247 571 248 603 249 619 250 553 251 472 252 462 253 446 254 447 255 436 256 455 257 429 258 477 259 474 260 437 261 377 262 407 263 417 264 426 265 369 266 427 267 431 268 422 269 450 270 388 271 425 272 434 273 396 274 395 275 402 276 410 277 457 278 435 279 408 280 405