## htsjdk.samtools.metrics.StringHeader # CollectInsertSizeMetrics HISTOGRAM_FILE=/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/InsertSizeMetrics/hg38-Chipseq_DOM_H3K27ac.pdf INPUT=/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/final_bam/hg38-Chipseq_DOM_H3K27ac.samtools-coordinate.bam OUTPUT=/ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/H3K27ac/results/qc/InsertSizeMetrics/hg38-Chipseq_DOM_H3K27ac.tsv DEVIATIONS=10.0 MINIMUM_PCT=0.05 METRIC_ACCUMULATION_LEVEL=[ALL_READS] INCLUDE_DUPLICATES=false ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false ## htsjdk.samtools.metrics.StringHeader # Started on: Fri Feb 19 10:43:43 CET 2021 ## METRICS CLASS picard.analysis.InsertSizeMetrics MEDIAN_INSERT_SIZE MODE_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_95_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP 158 154 11 2 239321902 157.900289 19.437131 22134332 FR 5 9 13 19 23 29 37 47 61 73 139 ## HISTOGRAM java.lang.Integer insert_size All_Reads.fr_count 2 3 3 2 4 1 5 1 8 3 9 10 10 8 11 6 12 9 13 6 14 10 15 5 16 7 17 5 18 6 19 3 21 1 22 2 23 1 28 2 29 2 30 73 31 89 32 151 33 182 34 207 35 281 36 389 37 410 38 521 39 610 40 735 41 824 42 940 43 1046 44 1135 45 1252 46 1340 47 1421 48 1576 49 1642 50 1766 51 1872 52 1994 53 2064 54 2263 55 2407 56 2522 57 2592 58 2724 59 2763 60 2899 61 3086 62 3129 63 3227 64 3423 65 3641 66 3655 67 3721 68 3827 69 3911 70 4230 71 4391 72 4638 73 4647 74 4831 75 5022 76 5171 77 5285 78 5461 79 5439 80 5628 81 5695 82 6767 83 6902 84 7320 85 7379 86 7783 87 7969 88 8178 89 8411 90 8826 91 9249 92 9592 93 9907 94 10221 95 10730 96 10913 97 11684 98 11783 99 12426 100 13059 101 13480 102 14235 103 14778 104 15438 105 16306 106 17172 107 17812 108 18774 109 19397 110 20599 111 21909 112 23040 113 24720 114 25811 115 27045 116 28917 117 30777 118 32967 119 35156 120 37775 121 40316 122 43281 123 46846 124 50356 125 54497 126 58058 127 63254 128 68917 129 75923 130 81941 131 90792 132 99970 133 111140 134 123020 135 137269 136 153026 137 170574 138 191297 139 214396 140 239429 141 266917 142 297834 143 329185 144 362804 145 394924 146 427868 147 458148 148 483952 149 505261 150 521368 151 534442 152 541412 153 544305 154 546999 155 545009 156 542138 157 536984 158 530179 159 521611 160 511077 161 502584 162 489146 163 475342 164 463327 165 448074 166 433387 167 416186 168 399631 169 382987 170 367526 171 352665 172 337502 173 322598 174 311157 175 297519 176 287147 177 277063 178 266659 179 254743 180 244673 181 234278 182 223768 183 214819 184 202976 185 192672 186 183642 187 171387 188 160405 189 147260 190 133353 191 117971 192 103260 193 87824 194 73568 195 59742 196 47145 197 36261 198 27167 199 20032 200 14395 201 9894 202 6867 203 4601 204 3093 205 2096 206 1395 207 1067 208 816 209 578 210 512 211 451 212 410 213 409 214 380 215 365 216 365 217 317 218 357 219 337 220 298 221 294 222 254 223 279 224 285 225 316 226 243 227 278 228 258 229 310 230 268 231 263 232 273 233 251 234 243 235 287 236 233 237 211 238 202 239 190 240 216 241 213 242 201 243 208 244 216 245 204 246 221 247 223 248 203 249 182 250 193 251 191 252 216 253 173 254 185 255 192 256 216 257 191 258 200 259 196 260 216 261 193 262 206 263 199 264 177 265 210 266 184 267 165 268 154