Module Section Sample Name Source fastp all_sections GSM2400260 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/GSM2400260.fastp.json fastp all_sections PRIM_LSC_ATAC_4 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/PRIM_LSC_ATAC_4.fastp.json fastp all_sections GSM2400261 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/GSM2400261.fastp.json fastp all_sections GSM4728093 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/GSM4728093.fastp.json fastp all_sections GSM4728094 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/GSM4728094.fastp.json fastp all_sections PKC19_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/PKC19_ATAC_3.fastp.json fastp all_sections PRIM_LSC_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/PRIM_LSC_ATAC_1.fastp.json fastp all_sections Dombi-23_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/Dombi-23_ATAC_1.fastp.json fastp all_sections PKC19_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/PKC19_ATAC_1.fastp.json fastp all_sections Dombi-23_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/Dombi-23_ATAC_2.fastp.json fastp all_sections PRIM_LSC_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/PRIM_LSC_ATAC_2.fastp.json fastp all_sections GSM736582 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/GSM736582.fastp.json fastp all_sections PKC19_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/PKC19_ATAC_2.fastp.json fastp all_sections PRIM_LSC_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/trimming/PRIM_LSC_ATAC_3.fastp.json Picard InsertSizeMetrics PKC19_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-PKC19_ATAC_2.tsv Picard InsertSizeMetrics PRIM_LSC_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-PRIM_LSC_ATAC_1.tsv Picard InsertSizeMetrics Dombi-23_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-Dombi-23_ATAC_2.tsv Picard InsertSizeMetrics PKC19_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-PKC19_ATAC_1.tsv Picard InsertSizeMetrics GSM2400261 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-GSM2400261.tsv Picard InsertSizeMetrics PRIM_LSC_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-PRIM_LSC_ATAC_3.tsv Picard InsertSizeMetrics GSM2400260 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-GSM2400260.tsv Picard InsertSizeMetrics PRIM_LSC_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-PRIM_LSC_ATAC_2.tsv Picard InsertSizeMetrics PRIM_LSC_ATAC_4 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-PRIM_LSC_ATAC_4.tsv Picard InsertSizeMetrics GSM4728093 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-GSM4728093.tsv Picard InsertSizeMetrics GSM4728094 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-GSM4728094.tsv Picard InsertSizeMetrics Dombi-23_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-Dombi-23_ATAC_1.tsv Picard InsertSizeMetrics PKC19_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/InsertSizeMetrics/hg38-PKC19_ATAC_3.tsv Picard DuplicationMetrics PRIM_LSC_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-PRIM_LSC_ATAC_1.samtools-coordinate.metrics.txt Picard DuplicationMetrics GSM736582 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-GSM736582.samtools-coordinate.metrics.txt Picard DuplicationMetrics GSM2400261 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-GSM2400261.samtools-coordinate.metrics.txt Picard DuplicationMetrics PKC19_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-PKC19_ATAC_2.samtools-coordinate.metrics.txt Picard DuplicationMetrics PKC19_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-PKC19_ATAC_1.samtools-coordinate.metrics.txt Picard DuplicationMetrics PRIM_LSC_ATAC_4 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-PRIM_LSC_ATAC_4.samtools-coordinate.metrics.txt Picard DuplicationMetrics GSM4728094 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-GSM4728094.samtools-coordinate.metrics.txt Picard DuplicationMetrics Dombi-23_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-Dombi-23_ATAC_2.samtools-coordinate.metrics.txt Picard DuplicationMetrics PRIM_LSC_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-PRIM_LSC_ATAC_3.samtools-coordinate.metrics.txt Picard DuplicationMetrics PKC19_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-PKC19_ATAC_3.samtools-coordinate.metrics.txt Picard DuplicationMetrics Dombi-23_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-Dombi-23_ATAC_1.samtools-coordinate.metrics.txt Picard DuplicationMetrics GSM2400260 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-GSM2400260.samtools-coordinate.metrics.txt Picard DuplicationMetrics PRIM_LSC_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-PRIM_LSC_ATAC_2.samtools-coordinate.metrics.txt Picard DuplicationMetrics GSM4728093 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/markdup/hg38-GSM4728093.samtools-coordinate.metrics.txt SamTools pre-sieve stats GSM2400260 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-GSM2400260.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats PKC19_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-PKC19_ATAC_3.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats GSM736582 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-GSM736582.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats PRIM_LSC_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-PRIM_LSC_ATAC_2.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats PKC19_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-PKC19_ATAC_2.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats PRIM_LSC_ATAC_4 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-PRIM_LSC_ATAC_4.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats PRIM_LSC_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-PRIM_LSC_ATAC_3.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats GSM2400261 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-GSM2400261.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats PRIM_LSC_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-PRIM_LSC_ATAC_1.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats GSM4728093 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-GSM4728093.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats Dombi-23_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-Dombi-23_ATAC_2.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats Dombi-23_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-Dombi-23_ATAC_1.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats GSM4728094 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-GSM4728094.samtools-coordinate.samtools_stats.txt SamTools pre-sieve stats PKC19_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/bwa-mem2/hg38-PKC19_ATAC_1.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats PKC19_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-PKC19_ATAC_3.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats PRIM_LSC_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-PRIM_LSC_ATAC_2.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats GSM2400260 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-GSM2400260.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats PKC19_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-PKC19_ATAC_1.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats PRIM_LSC_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-PRIM_LSC_ATAC_3.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats GSM4728093 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-GSM4728093.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats GSM4728094 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-GSM4728094.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats GSM2400261 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-GSM2400261.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats Dombi-23_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-Dombi-23_ATAC_1.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats PRIM_LSC_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-PRIM_LSC_ATAC_1.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats Dombi-23_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-Dombi-23_ATAC_2.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats GSM736582 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-GSM736582.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats PRIM_LSC_ATAC_4 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-PRIM_LSC_ATAC_4.samtools-coordinate.samtools_stats.txt SamTools post-sieve stats PKC19_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/samtools_stats/final_bam/hg38-PKC19_ATAC_2.samtools-coordinate.samtools_stats.txt deepTools plotPCA hg38 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/plotPCA/hg38.tsv deepTools plotFingerprint hg38 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/plotFingerprint/hg38.tsv deepTools plotProfile macs2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/plotProfile/hg38-macs2.tsv macs2_frips all_sections PRIM_LSC_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-PRIM_LSC_ATAC_2_featureCounts.txt.summary macs2_frips all_sections GSM2400261 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-GSM2400261_featureCounts.txt.summary macs2_frips all_sections Dombi-23_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-Dombi-23_ATAC_2_featureCounts.txt.summary macs2_frips all_sections PRIM_LSC_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-PRIM_LSC_ATAC_1_featureCounts.txt.summary macs2_frips all_sections PKC19_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-PKC19_ATAC_3_featureCounts.txt.summary macs2_frips all_sections PKC19_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-PKC19_ATAC_1_featureCounts.txt.summary macs2_frips all_sections GSM4728093 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-GSM4728093_featureCounts.txt.summary macs2_frips all_sections PRIM_LSC_ATAC_4 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-PRIM_LSC_ATAC_4_featureCounts.txt.summary macs2_frips all_sections GSM4728094 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-GSM4728094_featureCounts.txt.summary macs2_frips all_sections PRIM_LSC_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-PRIM_LSC_ATAC_3_featureCounts.txt.summary macs2_frips all_sections PKC19_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-PKC19_ATAC_2_featureCounts.txt.summary macs2_frips all_sections GSM2400260 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-GSM2400260_featureCounts.txt.summary macs2_frips all_sections GSM736582 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-GSM736582_featureCounts.txt.summary macs2_frips all_sections Dombi-23_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/qc/macs2/hg38-Dombi-23_ATAC_1_featureCounts.txt.summary mtnucratio all_sections Dombi-23_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-Dombi-23_ATAC_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections GSM2400260 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-GSM2400260.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections GSM4728093 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-GSM4728093.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections GSM4728094 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-GSM4728094.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections PRIM_LSC_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-PRIM_LSC_ATAC_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections PRIM_LSC_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-PRIM_LSC_ATAC_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections GSM2400261 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-GSM2400261.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections PKC19_ATAC_2 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-PKC19_ATAC_2.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections PKC19_ATAC_3 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-PKC19_ATAC_3.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections PKC19_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-PKC19_ATAC_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections GSM736582 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-GSM736582.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections Dombi-23_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-Dombi-23_ATAC_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections PRIM_LSC_ATAC_4 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-PRIM_LSC_ATAC_4.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json mtnucratio all_sections PRIM_LSC_ATAC_1 /ceph/rimlsfnwi/data/moldevbio/zhou/jsmits/Ananse_test_data/ATAC/results/bwa-mem2/hg38-PRIM_LSC_ATAC_1.samtools-coordinate-unsieved.bam.mtnucratiomtnuc.json